[Wed Aug 24 17:54:47 2016] >Input file: TM1FJKATD.pdb >TM segments: A3-18 MAIDEN score = -0.6137 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I12A-T17A 0.725530527712824 R13A-I18A 0.491124495234212 V4A-R9A 0.435979215393625 S10A-A15A 0.401798134724798 K3A-R9A 0.327265874754762 A11A-I18A 0.165517275775486 I12A-I18A 0.156575079713011 T8A-T17A 0.138627467362221 R9A-T17A 0.116304357632658 T8A-S16A 0.0926340141471877 Q5A-R14A 0.079715574948209 R9A-S16A 0.0618198425834509 L7A-I12A 0.0433391189184742 A11A-S16A 0.0284847081507857 Q5A-I12A 0.0275931417021349 L7A-A15A 0.0103914636804436 Y6A-A15A -0.00739238874211612 K3A-S10A -0.0118678128384555 R9A-I18A -0.0122439538001968 S10A-S16A -0.0227256729185985 R9A-R14A -0.0233778879580109 T8A-R14A -0.0334553992726759 T8A-I18A -0.03852339168595 K3A-A11A -0.039111240855591 Q5A-R13A -0.0455764324903372 K3A-I12A -0.0525074017691427 Y6A-R13A -0.0594110569263879 T8A-R13A -0.0689764689499919 V4A-R13A -0.08490616252202 Y6A-R14A -0.0857625299508902 T8A-A15A -0.0894151836640855 S10A-I18A -0.102363317145656 K3A-T8A -0.109233940596941 L7A-S16A -0.113722762270484 A11A-T17A -0.13504565295426 Q5A-S10A -0.15159931903928 V4A-R14A -0.154741806895695 R9A-A15A -0.208804874793606 L7A-R14A -0.213856864555745 S10A-T17A -0.214125923724797 V4A-I12A -0.214610043117279 Q5A-A11A -0.222487628899728 Y6A-I12A -0.237318557380503 L7A-R13A -0.24223986515762 Y6A-A11A -0.262569481433492 V4A-A11A -0.31499703907199 V4A-S10A -0.343465192155411