[Wed Aug 24 17:36:54 2016] >Input file: TM1ORSATD.pdb >TM segments: C29-45_C55-69 MAIDEN score = -15.2418 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V31C-I68C 1.02729030184212 L37C-D62C 0.673855679393352 A34C-L69C 0.661281084368365 A34C-V66C 0.608852037700002 V31C-L69C 0.580436169760951 E45C-L58C 0.55255832444138 A35C-L69C 0.536498106461365 V41C-L58C 0.473439544037893 E45C-L55C 0.450812239153036 A34C-I68C 0.400887534967611 S38C-V66C 0.383229402742182 V41C-Y59C 0.328109943983874 Y33C-V61C 0.322026814431636 S38C-L65C 0.319871669325354 L37C-L65C 0.293714620313659 A35C-L65C 0.278192207696611 V31C-D62C 0.248375042300081 S38C-L69C 0.245081857328808 S38C-L63C 0.237614199335847 V31C-I64C 0.229769281107143 S32C-L37C 0.217438445450927 V44C-D62C 0.212246512619383 V41C-I64C 0.211822658153074 L37C-V61C 0.179756525009862 G30C-S38C 0.177750621756593 V44C-R57C 0.166631888266108 V31C-V39C 0.165477905454171 V31C-L36C 0.162559505153252 A34C-V42C 0.153613409270512 S38C-V43C 0.140814744937053 V41C-L65C 0.137185953486537 I40C-L55C 0.12911966429921 S32C-V39C 0.119694245722756 L36C-V66C 0.119323982771246 L29C-L65C 0.119045724418776 A35C-D62C 0.118754576379916 Y33C-I67C 0.118088784421527 A35C-I67C 0.113650221849554 A35C-V61C 0.109134443207505 S38C-L60C 0.104564572074884 V42C-L60C 0.103344134270052 Y33C-V41C 0.100090999661048 S32C-V66C 0.0980045886167029 L36C-L58C 0.0966187249573571 I40C-L60C 0.0958496188850342 A34C-V43C 0.0924010358354042 V41C-V61C 0.0912934993579722 L36C-V43C 0.0891008327978131 A34C-I64C 0.0827334977432486 V43C-L58C 0.0809059006724979 V43C-L55C 0.0787390391956757 A35C-I68C 0.0784658883875839 V44C-L60C 0.0783924461829091 E45C-Y59C 0.0778379175577029 L36C-V61C 0.0775950918175612 G30C-V61C 0.0728836810556084 V43C-V61C 0.0688917954606181 S38C-E45C 0.0670638205789449 A34C-L60C 0.0657481651805803 V43C-D62C 0.0649324867709193 L29C-L69C 0.0607007160359823 L55C-I64C 0.06020341908037 S32C-I67C 0.0600271656825944 G30C-I67C 0.0579856826025118 G30C-I68C 0.0551614395323439 S32C-I40C 0.0531599510145728 V42C-V56C 0.0521703365817547 V42C-R57C 0.0511049711808518 L36C-I64C 0.0509247509659483 I40C-L63C 0.0487717687049312 L37C-L63C 0.0433827758998824 G30C-I64C 0.0427398651045241 I40C-D62C 0.0411121357990343 D62C-I67C 0.0407113045834855 V56C-I64C 0.03850088830717 L36C-V44C 0.0373952733028693 A35C-V43C 0.0353554230580952 V31C-I40C 0.0352308648219024 A35C-L63C 0.0336573024353148 S32C-D62C 0.0282228030110843 S38C-V61C 0.0260689239361991 E45C-V61C 0.0247292369448691 L37C-L60C 0.0246701372723628 V39C-Y59C 0.0242279708925324 L37C-V42C 0.0233821194071613 G30C-L63C 0.0215994222278217 I40C-V66C 0.0212027640488817 V44C-L55C 0.0203622294069881 A34C-L63C 0.0181401544826398 A35C-V42C 0.0089905915863504 V39C-L63C 0.00520290462789141 V42C-L58C 0.00428360781643633 V42C-V61C 0.00419156178023861 Y33C-V66C 0.00336551804624774 I40C-L69C 0.00300794735427168 A35C-I64C 0.00256970896177444 V44C-L58C 0.000326013012948323 S38C-L55C -0.000869294477639407 G30C-L69C -0.00146280131225573 A35C-V44C -0.00190481575364831 Y33C-I64C -0.00364837401838791 V43C-L65C -0.00457970081039871 A34C-L65C -0.00731604029995225 E45C-L60C -0.00930879168614407 L37C-E45C -0.012215369206933 L58C-I67C -0.0126185972363819 E45C-R57C -0.0174775727489304 L29C-L36C -0.0216597798649496 V43C-Y59C -0.0276790919291994 I40C-I64C -0.0305077866086236 V39C-I64C -0.0308488324414333 L36C-D62C -0.033517944619838 Y59C-I68C -0.0352408152798014 V31C-V61C -0.0355209477368215 L37C-L58C -0.0371205424058232 S32C-V41C -0.0390036641442544 S32C-S38C -0.0395382004166791 S38C-R57C -0.044828793251032 G30C-I40C -0.0459405787197411 V41C-L69C -0.0467908548672638 V31C-L63C -0.0489205500407364 L29C-I68C -0.049522090059563 V39C-V44C -0.0564200654416052 V39C-I68C -0.0592120717217606 V61C-L69C -0.0618109644015412 Y33C-D62C -0.0628989814002721 E45C-L63C -0.0629284900250042 V44C-L65C -0.0697951051824175 A34C-L58C -0.0708238365006988 V41C-R57C -0.0743749996661629 L37C-I68C -0.0745501355599778 I40C-E45C -0.0769787219786533 I40C-L65C -0.0799655434327147 S32C-I64C -0.0801201067054844 V42C-V66C -0.0803327872322872 L36C-I67C -0.0821602146262936 V44C-V61C -0.0821744704770269 G30C-V39C -0.0823022292043625 Y33C-L63C -0.0853629665769757 V44C-L63C -0.08676573313888 L37C-I67C -0.0889135055193977 V44C-V56C -0.0930567732191804 Y33C-L65C -0.0960480470900653 E45C-D62C -0.0967761725841138 Y33C-S38C -0.0990001237994615 L37C-Y59C -0.100719777528377 V39C-L60C -0.10117767108953 V41C-V56C -0.10479915553993 V39C-V61C -0.106357433658682 A34C-Y59C -0.107382885325238 L55C-L63C -0.107882161499495 R57C-D62C -0.108313965073552 L37C-L69C -0.109344016124005 V42C-L55C -0.110214892019747 V39C-I67C -0.110821038103017 V56C-L65C -0.111220990152512 V41C-I67C -0.112636710410563 G30C-D62C -0.113478773184232 V41C-I68C -0.116800311888102 L36C-L69C -0.116883872722814 G30C-V66C -0.119138456666221 L60C-L69C -0.120051954370448 V42C-D62C -0.125102428127391 L36C-V41C -0.125610456650756 V42C-I64C -0.132256284408665 S38C-I67C -0.135848414718975 L37C-I64C -0.136279963951995 L36C-I68C -0.13733635560314 A34C-D62C -0.140384306338885 E45C-V56C -0.14069570160438 V39C-D62C -0.143440031196482 Y33C-I68C -0.143584288751062 R57C-L65C -0.144701187852006 G30C-L65C -0.147843072401836 E45C-L65C -0.14877341874072 I40C-V61C -0.150960182671168 D62C-I68C -0.153179129794378 L58C-V66C -0.156813801438808 Y59C-I67C -0.157190472995612 Y59C-L69C -0.157245568199737 L36C-L63C -0.157665110894435 A35C-I40C -0.158116269477917 L36C-E45C -0.158405471367871 Y33C-I40C -0.158750023972278 L60C-I68C -0.15915159795627 L37C-R57C -0.162324861739185 L37C-V44C -0.163418369377281 L60C-I67C -0.16646461823135 V56C-V61C -0.16912515136196 I40C-R57C -0.16922470202812 I40C-Y59C -0.169831286827219 V61C-I68C -0.173841819400684 S38C-I68C -0.174511981740328 L29C-S38C -0.178186643774633 Y33C-L69C -0.18152129823511 L29C-L37C -0.182338532319312 V41C-L60C -0.184711008766837 S38C-D62C -0.186934068412467 L58C-L65C -0.188699719006823 Y59C-I64C -0.191507590097869 L55C-D62C -0.191612786673883 G30C-L37C -0.193259062526014 V43C-R57C -0.198445558670782 Y59C-L65C -0.199839833123393 L29C-A35C -0.199923956607448 V39C-L65C -0.201184709245696 S32C-L65C -0.201212012911828 A34C-I40C -0.204299671587231 L29C-A34C -0.211070304492671 V56C-L63C -0.216653382882683 S38C-L58C -0.220566021938605 V39C-L69C -0.221835412865233 V42C-L65C -0.225493962233957 R57C-L63C -0.226714908972443 V61C-V66C -0.226832450216257 A34C-V41C -0.227077790129578 V42C-L63C -0.228208756437934 V39C-L58C -0.233560107613778 V41C-L63C -0.24101425723854 S38C-I64C -0.241125023988706 L55C-L60C -0.243741605487163 A34C-V61C -0.252182874246436 Y33C-V39C -0.258888484165743 V44C-Y59C -0.266590907478601 R57C-V66C -0.266642962332833 V39C-V66C -0.277259195249831 S38C-V44C -0.282141847772172 V31C-S38C -0.283315034114311 A35C-V41C -0.28919713539868 V41C-V66C -0.289371167424503 L36C-V42C -0.290010451033808 V56C-D62C -0.291002159228716 L55C-V61C -0.291930819128867 S32C-L69C -0.294322182167328 A34C-I67C -0.296398618622108 V41C-L55C -0.296556870978827 L37C-V43C -0.298396718649924 D62C-L69C -0.304510201774949 G30C-L36C -0.312491009756338 S38C-Y59C -0.31422746004224 V31C-I67C -0.323546315780936 V39C-E45C -0.327522764561369 V31C-V66C -0.332286451252254 I40C-L58C -0.334956522348912 R57C-I64C -0.344766110905606 S32C-I68C -0.352450484515195 Y59C-V66C -0.362545608793924 V61C-I67C -0.362608788304485 V42C-Y59C -0.367580122154986 V31C-L37C -0.37281787983572 L58C-I64C -0.373729628421616 I64C-L69C -0.378060264448295 L58C-L63C -0.382833234846583 L63C-I68C -0.386262514413418 L60C-V66C -0.393285075265768 L37C-V66C -0.404268878194891 L60C-L65C -0.412036664901202 A35C-V66C -0.414078895150368 A34C-V39C -0.424865985400638 L36C-L65C -0.439437034228418 V31C-L65C -0.455843357083887 L63C-L69C -0.460718606319816 G30C-A35C -0.481167476818172 V41C-D62C -0.667284979701657