[Thu Aug 25 00:11:17 2016] >Input file: TM1P4TCGG.pdb >TM segments: A41-52_A61-68_A83-89_A105-112_A125-135 MAIDEN score = 107.1021 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- BBeads pair Empirical energy ----------- ---------------- L108A-Y132A 10 Y49A-L61A 10 V110A-Y130A 10 I64A-L88A 10 T112A-Y128A 10 A66A-L86A 10 T47A-S63A 10 N89A-S105A 10 R85A-G109A 8.31232040407474 D45A-G65A 2.42994909158449 I106A-I133A 2.18863394664185 L88A-I106A 1.21659396485933 G83A-L111A 1.18013211435405 S87A-I106A 1.14564323984366 L108A-N131A 0.996848762624925 I106A-Y132A 0.903288732498182 L108A-I133A 0.869695346231209 L86A-L108A 0.8139713346284 I64A-L86A 0.810975432261081 I106A-K135A 0.727764010880832 L88A-S105A 0.721430606779219 S63A-L88A 0.682743025314742 R48A-S63A 0.643039134777922 N89A-I133A 0.627489529732562 D45A-I64A 0.62100187834054 F42A-A68A 0.609804200018191 L108A-Y130A 0.596846787719368 R85A-L111A 0.594819894611151 K50A-L61A 0.5524131426887 G109A-R129A 0.552172757018641 R48A-L61A 0.53497382556931 F42A-S67A 0.532474292488427 F42A-A66A 0.523314810670481 Y46A-I64A 0.521613249335109 A68A-R85A 0.516317499222492 L111A-Y130A 0.506776407991202 R85A-L108A 0.504876447243472 S87A-I133A 0.501431635613554 I64A-R85A 0.445361253770448 I64A-S87A 0.440574697208632 S63A-S87A 0.426601046998876 A43A-A68A 0.401792070298093 S87A-Y132A 0.394569172379866 R41A-S67A 0.381903500019204 S87A-S105A 0.38151279298231 Y46A-G65A 0.374357580962661 I106A-G134A 0.365128547413017 T112A-A126A 0.360539830553632 I64A-N89A 0.335951809673947 V110A-N131A 0.335152115226135 G65A-G83A 0.314506375776179 D45A-A66A 0.314060136164322 A66A-A84A 0.313523735798048 Y46A-R85A 0.308763818279728 A84A-L108A 0.299656658082548 V44A-I64A 0.296853866786909 Y62A-L88A 0.288212105078341 G65A-R85A 0.283182965655219 G109A-G134A 0.280704250257379 A43A-S67A 0.27853088608177 G65A-S105A 0.273309121554564 G65A-S87A 0.267086466122178 G83A-N131A 0.255581721746244 G107A-N131A 0.253795275769259 R85A-I106A 0.251771052468889 S87A-Y130A 0.239225373885462 V44A-G65A 0.236920377609636 L88A-G134A 0.232749965560181 G65A-Y132A 0.231366590690135 L88A-G109A 0.230264982022707 A43A-G65A 0.227155040493168 D45A-L86A 0.219369391390365 Y62A-N89A 0.212286566804223 L86A-V110A 0.211031443363776 T47A-L61A 0.204490231881356 T47A-I133A 0.202498463381712 S87A-V110A 0.200162653286101 Y62A-K135A 0.199675137395008 L61A-N89A 0.198565481257628 G65A-Y130A 0.1984979836342 V44A-Y62A 0.198255231215757 R85A-Y132A 0.197207331213269 V44A-L86A 0.192325707482401 S67A-Y130A 0.187864044960969 L86A-I106A 0.18695953379774 S87A-L108A 0.186850825842392 D45A-L88A 0.186831623647193 S67A-L86A 0.185824720294157 S67A-G107A 0.185275546797842 A68A-S87A 0.183136213078685 A66A-S87A 0.181474548759539 R41A-D125A 0.176270566263876 S87A-G107A 0.176248649146103 G65A-N131A 0.175910371884206 G83A-Y132A 0.17529580388121 T47A-G107A 0.170064846980885 S63A-Y130A 0.167586943318283 S63A-L86A 0.166930447545964 L88A-G107A 0.166556206632941 L61A-G134A 0.163741347029674 A43A-V110A 0.161579463000396 A68A-G127A 0.160744062394903 S67A-Y128A 0.157161891852439 G65A-L88A 0.157076498310859 K50A-S63A 0.150514457985501 A43A-S87A 0.149171506877609 A84A-Y132A 0.149143533693712 L86A-G109A 0.14842022339826 S87A-G134A 0.147915056096208 L61A-Y132A 0.144997912856361 Y46A-Y130A 0.14260417751059 L86A-G107A 0.140514904753278 S105A-I133A 0.139981989400056 Y62A-L108A 0.138426361403511 D45A-R85A 0.138119970330495 G83A-G127A 0.137928556026864 R85A-Y130A 0.135786851049771 V110A-Y128A 0.13280465282971 A43A-G83A 0.130897968803839 G65A-L111A 0.130509195845256 A43A-S63A 0.129545977364561 Y62A-Y130A 0.128447644687185 L88A-Y130A 0.127308845234381 Y49A-Y62A 0.126408203331624 A68A-Y130A 0.125263667012967 Y46A-G127A 0.125009158969402 G65A-I133A 0.122022349164824 S67A-R85A 0.12123314485571 S63A-A84A 0.120979087123703 A68A-Y128A 0.119056855534012 V44A-A66A 0.118710270161176 I64A-Y130A 0.118597381911687 A66A-Y132A 0.118021150823822 D45A-N131A 0.117008836615681 G83A-G107A 0.116742345357002 R85A-T112A 0.116469147242254 G83A-A126A 0.115947931811369 S67A-L108A 0.115646584238353 L61A-S105A 0.115411753272615 G109A-N131A 0.114793977342112 Y52A-L61A 0.114640376054187 N89A-I106A 0.113054948141924 G65A-L86A 0.112655908079262 T47A-G127A 0.110232868727811 Y49A-Y130A 0.109005176494184 Y46A-S87A 0.106979176155447 T47A-S105A 0.106207626053227 T47A-V110A 0.105170078918995 R85A-G107A 0.105029601509272 L108A-Y128A 0.10463902638602 G65A-R129A 0.102612247638687 D45A-V110A 0.0985370807974046 A68A-G107A 0.0982152237474017 N89A-G107A 0.0980186778438688 V44A-L88A 0.0977211217903617 V44A-G83A 0.0970524682581035 A84A-L111A 0.0949678201771755 G83A-G109A 0.0939029862633518 G83A-T112A 0.0936905998228319 Y49A-L88A 0.0935671827870284 I64A-S105A 0.0924185530471764 G109A-G127A 0.0920990872814267 R85A-R129A 0.0904491275952656 A43A-G109A 0.0896195407993607 V44A-S67A 0.0888999689248389 S63A-R85A 0.0872304883666031 A84A-Y128A 0.0870627777227861 V44A-G109A 0.0836024826978466 T47A-S67A 0.0831588031083607 R85A-S105A 0.0830178179454988 T47A-I64A 0.0829249519839319 T112A-R129A 0.0828067026949435 A66A-S105A 0.0808134222513091 A66A-N89A 0.0806369621832239 L108A-G134A 0.0805167955171605 R48A-N89A 0.0799909177921698 Y49A-I133A 0.0794784974695162 S105A-G134A 0.0728707654166576 R41A-L86A 0.0728447159613825 R41A-G65A 0.0700683105304645 G107A-R129A 0.068719669937777 R41A-L111A 0.0682384997766481 D45A-A68A 0.067295110950651 T47A-R85A 0.0666294904548427 L61A-I106A 0.0657882448241855 L111A-D125A 0.0655103632923995 R48A-N131A 0.0648742153496489 R41A-T112A 0.0642832532533699 L61A-K135A 0.0636372340533407 Y46A-L86A 0.0631140415367186 A66A-L111A 0.0625769291368434 T47A-Y130A 0.0612093058092138 S87A-K135A 0.0604647150563844 R48A-L88A 0.0604114961721072 T47A-R129A 0.0589819218233909 Y46A-N89A 0.0579677392590745 L61A-N131A 0.0543403421803053 N51A-Y62A 0.0536055684334676 I64A-I106A 0.0526923952880693 S67A-L88A 0.0520311097222197 A66A-I106A 0.0520192344629766 Y49A-S87A 0.0497142777749371 S63A-G109A 0.0491844206500529 A68A-R129A 0.0489644491203078 V110A-A126A 0.0481869824104759 F42A-G83A 0.0465352509880166 L61A-S87A 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