[Thu Aug 25 00:21:06 2016] >Input file: TM2F1VCGG.pdb >TM segments: A19-48 MAIDEN score = 38.2414 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- BBeads pair Empirical energy ----------- ---------------- L31A-A47A 10 F33A-L45A 10 Y35A-V43A 10 T34A-V43A 1.44112370373757 T32A-L45A 1.12342515396995 L31A-L46A 0.878307555460172 F33A-V43A 0.801823884548668 M36A-I41A 0.748726128128316 Y35A-I41A 0.670457533822199 L31A-L45A 0.66917145929795 T32A-L46A 0.588280428668007 L29A-A47A 0.565499170862918 A37A-V43A 0.452636291192595 T34A-G42A 0.442683414104697 F33A-L46A 0.423106901031232 Q28A-A48A 0.34775857782021 T34A-L45A 0.319572195456479 L29A-A48A 0.27247334367861 M36A-V43A 0.267965719587597 M36A-G42A 0.259958058955262 L31A-A48A 0.249342157780519 T34A-N40A 0.1923273253289 G30A-A48A 0.17315704334748 T34A-D39A 0.161329170608168 A37A-G42A 0.16013819984984 T34A-E44A 0.15464280623293 T32A-G42A 0.123691800591062 G30A-E44A 0.120641840469782 T32A-E44A 0.116394365266724 F33A-A47A 0.112302004208066 N26A-A48A 0.107172858482792 L31A-E44A 0.105533805508177 F33A-E44A 0.101875977149191 M36A-E44A 0.095941473985409 F33A-A48A 0.0913155100464094 G30A-L46A 0.0822385931786918 Y35A-G42A 0.0160698243820345 Y35A-N40A 0.00804325637849668 Y35A-E44A 0.00794608667175911 N26A-A47A -0.00419829045465515 T27A-L46A -0.00611175335195613 F33A-T38A -0.0113974402585075 Y35A-L46A -0.0166927216580266 T38A-E44A -0.0191099398680157 M36A-L45A -0.0234731536962842 T38A-V43A -0.0282943803993927 N25A-A48A -0.0436105755734033 T32A-A47A -0.0603059248018423 L29A-L45A -0.0607100382203303 T27A-A47A -0.0630304435259261 Y35A-A47A -0.0678264700836111 N26A-L31A -0.0716121384984536 Q28A-A47A -0.0720823989735646 F33A-I41A -0.0729222560257341 L31A-V43A -0.0867450108271584 T32A-V43A -0.0907618238178367 Q28A-L45A -0.0919085764175089 A37A-E44A -0.0979672744585685 A37A-L45A -0.0993277795474796 T34A-A47A -0.108653898217278 F33A-G42A -0.110448669487734 T32A-A48A -0.122589004325385 Q28A-L46A -0.139005149481367 Y35A-L45A -0.173403951104867 D39A-E44A -0.217486717319245 T27A-A48A -0.21969706811881 F33A-N40A -0.229998893449807 T34A-L46A -0.233199271959545 G30A-L45A -0.261581004489566 T34A-I41A -0.386653636159311 L29A-L46A -0.459315497020009 G30A-A47A -0.461581590179997