[Wed Aug 24 17:18:31 2016] >Input file: TM2LLMCGD.pdb >TM segments: A11-41 MAIDEN score = -2.9150 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- BBeads pair Empirical energy ----------- ---------------- I20A-G25A 0.452866076160454 V27A-V32A 0.414942939414702 I35A-L40A 0.354909205749699 I33A-M39A 0.319946076403079 V32A-L37A 0.30465050277672 V34A-M39A 0.291291986627304 V24A-I29A 0.274439832079329 M23A-I29A 0.255931314198582 G26A-T31A 0.242622806759718 L22A-V27A 0.224316336939609 I19A-V24A 0.214396284339316 V34A-L40A 0.205412097119028 N15A-M23A 0.20216278748459 G21A-I29A 0.199511294790402 I20A-V28A 0.190495678202588 I19A-G25A 0.1902380142983 I35A-K41A 0.186148533023404 I33A-V38A 0.15997453384273 I20A-I29A 0.142199298499795 N15A-I20A 0.133890804272583 V27A-I33A 0.130170394507176 I33A-K41A 0.127827879356224 G13A-A18A 0.120901154869326 V32A-V38A 0.116660488786906 G21A-A30A 0.109207142638323 M23A-V28A 0.108132221586963 L22A-V28A 0.107623831069152 T36A-K41A 0.0989130514826666 G25A-A30A 0.0912788178633814 V12A-G17A 0.0860761075996557 G25A-V34A 0.0848247374428004 G17A-G25A 0.084596882431176 I19A-I29A 0.0758467578793804 K16A-V24A 0.071547505393748 L22A-A30A 0.0668235317247614 M23A-T31A 0.0611786225265774 G25A-I33A 0.0596120457453506 T31A-M39A 0.056058576558414 I20A-A30A 0.0394317143062395 G17A-G26A 0.0353797598298811 S14A-G21A 0.0320952211772865 G13A-I19A 0.0297312389755642 I19A-V28A 0.0296812332916341 V12A-A18A 0.0181215856672488 G21A-T31A 0.0179664593738118 V12A-I19A 0.0166776760736332 V27A-L37A 0.0120840846068533 G17A-L22A 0.0099565305001228 V24A-I33A -0.00129739465277368 I29A-V34A -0.00509735751788831 T31A-L40A -0.00757540066117723 N15A-G21A -0.00898039623070024 A30A-V38A -0.01009409284298 V28A-I33A -0.0148084283376857 V28A-V34A -0.0186476606804966 A18A-G26A -0.019058693553023 L22A-T31A -0.0208924656104212 I20A-G26A -0.0214615867547074 A30A-M39A -0.0231528684662292 S14A-I20A -0.0232283429217042 G21A-G26A -0.0233553748561373 G26A-V34A -0.0310564241741798 V27A-T36A -0.0323818487140559 M23A-V32A -0.0375350700769133 K16A-G25A -0.0386845668164488 V28A-T36A -0.0419160063122543 A18A-V27A -0.0505365471419745 A18A-V28A -0.0526831051892822 I29A-V38A -0.0572655011856451 V24A-A30A -0.0592654582933378 D11A-G17A -0.0690733685749647 N15A-L22A -0.0723964778888813 G21A-V27A -0.0774823425913223 A18A-G25A -0.0867844331238863 G25A-T31A -0.0944764215747709 V32A-L40A -0.0974494502758194 V28A-L37A -0.098078933976069 G26A-I35A -0.104101397890717 V24A-V32A -0.105069689455048 N15A-V24A -0.10821569204069 V27A-I35A -0.109576155431835 V32A-K41A -0.111528595930245 G17A-V24A -0.111783008667414 I29A-L37A -0.114763273077881 G13A-I20A -0.117060150777091 G25A-V32A -0.12491690872606 V12A-I20A -0.126272082546651 G17A-M23A -0.130789628446679 D11A-A18A -0.132382469887461 G26A-V32A -0.139318356656898 T31A-L37A -0.146149593470291 D11A-K16A -0.147725729412907 K16A-M23A -0.170443954364081 K16A-L22A -0.180118770644556 G21A-V28A -0.180811840624298 I20A-V27A -0.183938069311542 S14A-L22A -0.18974711602313 A30A-L37A -0.193014406751296 T31A-T36A -0.197809878005712 V24A-T31A -0.200274021583876 V28A-I35A -0.201292839452613 I29A-I35A -0.213312114249065 I19A-V27A -0.21799629321889 A30A-T36A -0.220603952782421 T31A-V38A -0.223588531795378 G26A-I33A -0.224426786380481 A18A-V24A -0.233284125448392 I29A-T36A -0.239310905986932 V34A-K41A -0.24320657529585 M23A-A30A -0.248964046176918 K16A-G21A -0.27878996384877 A18A-M23A -0.280547137824628 V32A-M39A -0.28451954561067 I19A-G26A -0.297516974174926 L22A-I29A -0.335054144920388 I33A-L40A -0.34229746597858 S14A-I19A -0.352388458108502 V27A-V34A -0.353129515292027 A30A-I35A -0.462947021577016