[Thu Aug 25 00:00:52 2016] >Input file: TM2LOMCGG.pdb >TM segments: A55-87 MAIDEN score = -3.9686 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- BBeads pair Empirical energy ----------- ---------------- G80A-E86A 0.484662116718902 T76A-Y81A 0.472442342211243 V77A-S82A 0.425077443967717 G80A-R85A 0.420045732182898 I58A-M63A 0.365032359106511 Q68A-G73A 0.348474680578496 R64A-G69A 0.333756352590552 G78A-M83A 0.324634707290776 V72A-Y81A 0.310443446550474 A74A-S82A 0.30544104453443 V65A-V71A 0.283119928415411 T76A-E86A 0.281557205983897 V72A-V77A 0.266920588753921 S57A-A67A 0.255094376506394 H62A-G69A 0.229611950118558 I61A-V71A 0.221891632433065 R64A-V72A 0.200451726317038 F70A-M75A 0.189414327592627 I61A-A67A 0.17081018422639 L60A-G69A 0.152092877037973 I61A-G69A 0.145305332393729 M75A-Y84A 0.144607843711065 M56A-I61A 0.138108196288318 I58A-Q68A 0.126549135307613 K55A-I61A 0.126496695066327 V71A-T76A 0.125510967852215 S57A-R64A 0.120866593821457 M75A-G80A 0.117258310995057 F70A-G78A 0.114178261561831 H62A-A67A 0.113892422535784 V72A-G80A 0.113214804021498 V65A-F70A 0.109703575501634 A66A-A74A 0.107358214110544 L60A-V71A 0.103834461111977 G78A-F87A 0.102839922396404 G78A-R85A 0.0994689477432491 M56A-R64A 0.0990030737949956 V71A-G80A 0.0912234420746325 S57A-Q68A 0.0907995779895217 M56A-A67A 0.0780651869897984 I61A-A74A 0.0775588040889872 R64A-G73A 0.0744378092681535 V65A-M75A 0.0672801233564879 T76A-R85A 0.0671902449531531 I61A-A66A 0.0532074489922216 V72A-G78A 0.0532054426963988 H59A-A66A 0.0430281758044772 F70A-M79A 0.0425565858110572 H59A-F70A 0.041670161481477 A66A-G73A 0.0372160039854705 M56A-V65A 0.0357198845292173 L60A-Q68A 0.0333475100155809 K55A-H62A 0.0310719557217958 A74A-M79A 0.0286750725644822 G69A-G78A 0.0273500234995403 A66A-V71A 0.0260427929237501 H59A-G69A 0.0258994130908357 M56A-F70A 0.0235479160541883 M56A-A66A 0.0226567076178581 I58A-V71A 0.0210696839848832 G73A-S82A 0.0188081599324916 A67A-T76A 0.00990742873943429 R64A-A74A 0.0082258317805195 G78A-Y84A 0.00401790016911896 G69A-M75A -0.000397570212998355 V71A-V77A -0.00107760069336571 H59A-Q68A -0.00304678656519464 G73A-M79A -0.00529087125096495 Q68A-G78A -0.00694729488743517 S57A-F70A -0.00902170837148342 V65A-A74A -0.0150351408095637 M63A-V72A -0.0153038416527211 H62A-F70A -0.0178811354928565 A66A-M75A -0.0180311503848269 S57A-V71A -0.0194677968140691 Q68A-V77A -0.0198749152868261 S57A-V65A -0.0200455166394062 I58A-F70A -0.020069049329547 M63A-V71A -0.0213439816322053 V71A-M79A -0.0224331455328388 A74A-M83A -0.0256337507845275 V77A-F87A -0.0260064965656446 G73A-G78A -0.0285945509488001 T76A-F87A -0.0294780134914454 I58A-R64A -0.032329706456435 I58A-A66A -0.0326757096480987 A67A-M75A -0.0334882660847109 A74A-Y81A -0.0338661042495141 G73A-Y81A -0.035652449199068 M75A-M83A -0.0362417604115748 F70A-T76A -0.0459850760087472 M63A-Q68A -0.0473464087846711 V71A-Y81A -0.0473984435128996 I61A-G73A -0.0493555640725547 L60A-F70A -0.0527220327012161 M79A-F87A -0.053694433727375 I58A-V65A -0.0547134718149218 K55A-R64A -0.0588455818921658 R64A-F70A -0.0648335203323565 L60A-A67A -0.065501719555165 A67A-V72A -0.0720927530728268 I61A-Q68A -0.0729958306125895 G69A-T76A -0.0770811605968236 Q68A-A74A -0.0872023335857692 Y81A-F87A -0.0877282092904099 M75A-E86A -0.0895027808744704 M56A-M63A -0.0899818998227593 M79A-Y84A -0.0914245787038137 V72A-S82A -0.0915549223915355 H59A-V71A -0.0920880090674547 M56A-Q68A -0.094221824303439 F70A-V77A -0.0968110733553145 T76A-M83A -0.100668642394473 H62A-Q68A -0.101315329635161 H59A-A67A -0.102374519015572 V65A-G73A -0.104004457829536 M75A-Y81A -0.10926697313745 I58A-G69A -0.11121659869757 G69A-M79A -0.11186421674023 H62A-V71A -0.112584062677051 A74A-Y84A -0.113093941715866 S57A-A66A -0.113718246962756 S82A-F87A -0.11702700797958 V71A-G78A -0.120746478483594 G69A-A74A -0.125291441282562 K55A-A67A -0.128788033697874 I61A-V72A -0.131606469197448 Q68A-T76A -0.132713109862642 K55A-L60A -0.134954686886087 T76A-Y84A -0.136914367138223 H59A-R64A -0.14226318783047 V77A-R85A -0.152482023712647 G73A-G80A -0.156223937184569 G69A-V77A -0.16021721544027 M56A-V71A -0.16210729363747 R64A-V71A -0.167826010883269 M56A-H62A -0.170654380927349 G80A-F87A -0.172426057752708 M79A-R85A -0.172452369267282 M63A-G69A -0.185358036690691 K55A-M63A -0.190710476919324 A67A-A74A -0.191605379408422 M79A-E86A -0.192568456288966 M75A-S82A -0.192856448260601 S57A-M63A -0.192940156551033 G78A-E86A -0.194738126036997 G73A-M83A -0.20788125971667 Q68A-M75A -0.215940171889989 M75A-R85A -0.222755126218111 L60A-V65A -0.225230583841109 A67A-G73A -0.250697588577885 I61A-F70A -0.258213689590076 H59A-V65A -0.265085633227484 M63A-F70A -0.268383565245433 T76A-S82A -0.268969030859993 A74A-G80A -0.270675581564372 I58A-A67A -0.294736951577705 L60A-A66A -0.297060765639247 S57A-H62A -0.307649633946336 V77A-E86A -0.312857090054091 A66A-V72A -0.327681197101048 V77A-M83A -0.339828249428462 V65A-V72A -0.348893342577097 V72A-M79A -0.356734432578058 V77A-Y84A -0.386626679486569 Y81A-E86A -0.707744310134777