[Wed Aug 24 17:23:11 2016] >Input file: TM2LOPCGD.pdb >TM segments: A26-40_A56-73 MAIDEN score = -3.6136 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- BBeads pair Empirical energy ----------- ---------------- F34A-A39A 0.590388285036823 A39A-S56A 0.449845942217776 F58A-L63A 0.442872549978393 F61A-I66A 0.428939001344749 A39A-A60A 0.377764603327757 T59A-A64A 0.316550528144298 G40A-L57A 0.286528272889923 A60A-G68A 0.28327586617886 G36A-T59A 0.277485349584609 L57A-F62A 0.27084335945051 G40A-F58A 0.228108929551 F61A-M67A 0.211827755204036 L29A-V35A 0.20585646203365 I30A-G36A 0.201336521670823 I30A-T59A 0.190805082680329 C37A-F62A 0.170140847173093 S56A-A64A 0.164345135495218 L29A-C37A 0.164203111826562 G32A-L57A 0.162946882214344 S56A-F61A 0.162183089386101 F62A-M67A 0.16027984537781 V35A-F62A 0.151069714908671 F34A-F62A 0.150304851978626 S28A-M67A 0.150031227197592 S28A-G36A 0.149807442923733 G36A-S56A 0.14189864911078 I30A-L63A 0.139142889954798 S28A-C37A 0.135436599069414 L33A-L38A 0.125407897006306 I30A-V35A 0.123031612779479 L29A-L38A 0.121750298582712 T59A-T65A 0.117412660530833 G32A-F62A 0.115820583654622 P27A-L33A 0.115303598636211 G36A-F62A 0.115246796713282 G36A-A64A 0.112086004328326 G32A-G40A 0.110444525426727 L63A-G68A 0.108789590559295 F61A-F71A 0.107876008723927 L33A-S56A 0.106723828313847 G32A-A64A 0.105458624741094 V35A-L57A 0.105335322521904 L38A-L63A 0.0978962851099894 F62A-G68A 0.096963055123648 G40A-T59A 0.0966845591095784 L29A-A64A 0.0952482360861264 V35A-S56A 0.0945622362850331 G32A-F58A 0.0945001413051623 V26A-A31A 0.0932563523901209 A31A-A60A 0.0929800269512504 L57A-I66A 0.0928100573680792 V35A-T59A 0.0924922451349568 V35A-T65A 0.0908531544792335 L33A-L63A 0.0894371098405564 L29A-F62A 0.0885673192880148 S28A-T59A 0.0854442196251426 T65A-K72A 0.0842088048169995 S56A-T65A 0.0841385063804294 A31A-T59A 0.0766020952850064 T59A-M67A 0.0701048304157477 L29A-L63A 0.064273734676862 L38A-F61A 0.0636889277405439 V26A-V35A 0.0628780718820012 L33A-A60A 0.0605980883007859 A31A-A64A 0.057480652582214 P27A-L63A 0.0568959850731385 L33A-F58A 0.0567013691413134 G36A-L63A 0.0552363637550953 C37A-A60A 0.0543115206106108 A39A-L63A 0.0541678504280227 L33A-T59A 0.0483362436526829 A60A-V69A 0.0480487658250137 L29A-F34A 0.0466254952263903 F58A-M67A 0.045179038086694 F34A-F61A 0.0426401686845743 A31A-S56A 0.0425069105432749 I30A-A39A 0.0384767733265559 L38A-A60A 0.038162886288845 A64A-R73A 0.0376879811057576 A64A-V69A 0.0358291395245649 L29A-A60A 0.0328987319748375 F62A-R70A 0.0300607793403155 S28A-L63A 0.026691074042045 A31A-L63A 0.0256090401835758 F34A-G40A 0.0244649355565976 A31A-M67A 0.0230852656238749 L38A-F58A 0.021939406511291 I66A-K72A 0.0203329063149134 V35A-L63A 0.0188595649792314 G32A-F61A 0.0186762890936389 F62A-V69A 0.0164521403407889 L57A-F71A 0.0162449015633026 A31A-A39A 0.0117964574476507 F34A-L63A 0.00497160024011567 V26A-F34A 0.00244344991665479 A31A-I66A 0.00227219767438669 L63A-F71A 0.00150299829178646 L57A-L63A 0.00137851471982486 F34A-A60A -0.000161693120299899 L57A-T65A -0.00354998991043942 G32A-S56A -0.0067423013958674 S56A-F62A -0.00773852902123906 G40A-A60A -0.00846118312666189 F58A-A64A -0.00991670336234485 T59A-R70A -0.012029395263534 G68A-R73A -0.0191896250881252 S28A-F34A -0.0203818249925027 A60A-I66A -0.0231906617448612 V35A-A64A -0.0234448119619914 A39A-F61A -0.0290075423544067 C37A-L63A -0.031069321952927 L63A-V69A -0.0322954646267775 S28A-A60A -0.0393140918224848 A64A-R70A -0.0400815271402273 G36A-F61A -0.0447978965738853 A31A-L38A -0.0455001339895773 A60A-T65A -0.0456203345160731 T59A-F71A -0.0463569242993822 L38A-F62A -0.0488444969855104 S28A-F62A -0.049307131368816 F58A-G68A -0.0532564943080979 V35A-G40A -0.0544378560919236 L29A-T59A -0.0557636330825639 A31A-G40A -0.0562177846562744 T65A-F71A -0.0566548677061771 V26A-L33A -0.0580692518778356 G32A-T59A -0.0587197030408073 F34A-S56A -0.0609936176934991 P27A-V35A -0.0640201593980174 G36A-F58A -0.064279744177945 C37A-F58A -0.0673204609213496 L57A-R70A -0.0674348316208289 V35A-F61A -0.0688059163968653 T59A-G68A -0.0689281063866338 I30A-G40A -0.0711952095021977 F58A-R70A -0.0722233938709239 S28A-L33A -0.0740740826400845 G36A-A60A -0.0764602858966472 F58A-I66A -0.077316058944743 A60A-F71A -0.0781845507663754 S28A-I66A -0.0802845332444095 A60A-R70A -0.082334889036316 I30A-A60A -0.0844323524252122 S56A-I66A -0.0906285298416621 G32A-C37A -0.0922038929766815 L29A-S56A -0.0951796822200199 V35A-I66A -0.0982300956024371 T59A-V69A -0.0982855288919469 F61A-K72A -0.0984322744780375 G32A-A60A -0.0985239847858268 S28A-A64A -0.0985375280250693 I66A-F71A -0.104578886930378 A39A-F62A -0.106154059195956 L33A-L57A -0.106899729931301 A31A-F62A -0.10874724219247 F61A-V69A -0.11341322219405 G32A-I66A -0.113892628821014 I30A-L38A -0.120833692517441 P27A-G32A -0.12564439928091 L33A-F62A -0.129197298075797 F34A-L57A -0.129372204719874 G36A-L57A -0.130032035938851 V26A-G32A -0.130323533663513 F62A-F71A -0.134901159173924 F34A-T59A -0.136072502077704 A60A-K72A -0.137114403516124 A64A-K72A -0.137382047240773 G32A-L38A -0.140558538239526 M67A-K72A -0.145292828451037 L33A-A39A -0.14541289713825 A31A-F58A -0.149386540221756 F34A-F58A -0.153807730421353 A31A-G36A -0.160542098618708 C37A-L57A -0.16108344814865 V35A-A60A -0.161707635937838 L29A-A39A -0.163807976226297 L57A-A64A -0.166436254025014 A31A-C37A -0.169457605415224 P27A-F34A -0.172793283048253 G32A-L63A -0.177263133705993 A31A-F61A -0.177326472359566 T65A-R70A -0.178162153393933 F61A-G68A -0.183052209772601 A39A-L57A -0.187802863226427 L63A-R70A -0.189729855590962 S56A-L63A -0.194709199381415 A64A-F71A -0.206491345752738 T59A-I66A -0.215946697332364 L38A-L57A -0.218019158415713 L63A-K72A -0.220451901589795 G40A-S56A -0.221957640369312 A60A-M67A -0.229698921667621 F61A-R70A -0.238562612278794 G32A-A39A -0.243851645171349 L38A-T59A -0.247219522812863 I30A-C37A -0.26822668393832 L33A-G40A -0.27825725367604 S28A-V35A -0.299729476816421 M67A-R73A -0.320866276440153 L29A-G36A -0.332477612104624 C37A-F61A -0.332807692035159 L38A-S56A -0.334849249224835 V35A-F58A -0.374135897304555 A39A-T59A -0.375412278681698 F58A-T65A -0.395072872653411 A39A-F58A -0.438443276467231 C37A-T59A -0.49621955047372 C37A-S56A -0.554685371610061