[Wed Nov 30 05:39:58 2016] >Input file: TM2LP7ATD.pdb >TM segments: A42-58_C43-58_B42-58 MAIDEN score = -8.7512 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- W42B-N47B 0.386985466571811 W42A-N47A 0.383135304040003 A43B-W48B 0.274332209527916 F49B-Y57B 0.207077681560174 L45B-N53B 0.205118720837119 L45A-N53A 0.202682770489698 A43C-W48C 0.189971137974556 F49A-Y57A 0.1889651721776 L45C-N53C 0.18815703747718 A43A-W48A 0.186882211098288 S44C-N50C 0.179414673201175 S44B-N50B 0.169859689519888 W46B-W46C 0.162193869938244 W46B-W46A 0.133004111846971 N53C-I58C 0.132564888951862 I51A-I58A 0.130559599739501 L45C-N50C 0.130358830231002 N50C-L55C 0.126584348998957 N50B-L55B 0.121460550134301 S44A-N50A 0.120944907208266 T52B-Y57B 0.118397833331033 W46B-W54B 0.115284309695036 N47C-W54C 0.110889434260391 N47B-W54B 0.10753261359277 T52A-Y57A 0.107340128060976 L45A-N50A 0.105610560453014 N53A-I58A 0.098924448086438 N47A-W54A 0.0971199804644516 W42B-W46A 0.0960582938146048 S44B-N53B 0.0909904156775676 W46C-W42A 0.0906539380391767 W42B-A43A 0.0884833096062012 N53B-I58B 0.086212003877935 S44C-N53C 0.0799317561763067 N50A-I58A 0.0783702083221911 W46A-W54A 0.0778417626956918 N50A-L55A 0.0728263027737048 N50B-I58B 0.0715197208993628 W46C-W54C 0.0698632714614051 W42B-W42A 0.0644327175081938 N50C-I58C 0.0638784252364233 A43C-A43A 0.0636593282889844 A43B-A43C 0.058465636162488 Y57B-T52C 0.058399959388626 L45B-N50B 0.0579254632745299 S44A-N53A 0.0478095681731761 W42B-F49B 0.0374158051585747 W42A-F49A 0.0303407289286541 W48B-N53B 0.0295259389951852 W46A-L55A 0.0265270491813107 W46B-L55B 0.0255465200329771 W48A-N53A 0.0252135576162935 N47B-N53B 0.0199552240264063 W48B-W56B 0.0141493272772015 W48A-W56A 0.0141073116981625 A43B-N50B 0.00842942848038053 N47C-N53C 0.00740459837586416 I51B-I58B 0.00682671075138508 A43B-A43A -0.00540408160500938 W48C-N53C -0.0089048150066704 S44B-T52B -0.0121725312272276 S44A-T52A -0.0146176813540557 N50A-W56A -0.0152004527824071 N50B-W56B -0.0175681312375802 I51C-W56C -0.021235475450597 N47A-N53A -0.0270860885113064 W46C-L55C -0.0294295237288367 W46A-N53A -0.0303371987016323 W46C-N53C -0.0318608953145989 S44C-T52C -0.0339868479329808 N50C-W56C -0.035846134646435 W48C-L55C -0.0402326012246981 A43C-W42A -0.04150418598699 W46B-N53B -0.0418536973641393 F49C-Y57C -0.0456514761450446 F49A-W56A -0.0499273390084491 A43A-N53A -0.056523353932026 A43B-W46C -0.0568816406069589 N50B-W46C -0.0581728545342797 A43C-N53C -0.0590260827893676 W46B-A43C -0.0597579011935645 A43C-N50C -0.0608945483687711 W46B-A43A -0.0617253678674683 A43B-W46A -0.0625590363158871 I51C-I58C -0.0637778740079629 A43A-N50A -0.0663129250045498 A43B-N53B -0.0686392915165537 T52C-Y57C -0.0725750979354456 A43C-I51C -0.0727107540724559 A43A-I51A -0.0786707410153449 S44B-I51B -0.0832304370949792 L45B-T52B -0.0857568794231209 N53B-T52C -0.0881465857503207 S44A-I51A -0.0881682379946443 S44C-I51C -0.0896691445136297 F49B-W56B -0.0897816543281484 A43B-I51B -0.0923230468028597 W48A-L55A -0.111763883596529 L45C-T52C -0.119645427992269 L45A-T52A -0.130923139974488 W42A-N50A -0.136311195754304 L45A-I51A -0.141605582905082 I51C-Y57C -0.143140739200229 A43C-F49C -0.150126155958317 I51A-Y57A -0.159283163291718 L45C-I51C -0.159300434905274 N47A-L55A -0.160177515766907 N47B-L55B -0.160192267414379 N47C-L55C -0.162576879399513 F49C-W56C -0.163336822092656 N50C-Y57C -0.163404841757945 N47A-T52A -0.164336255677187 F49B-L55B -0.165776174720427 W42B-N50B -0.171680499705486 F49A-L55A -0.178232913787763 W48C-W54C -0.17824635603022 W48A-W54A -0.179018648574509 F49C-L55C -0.185752913182401 N47C-T52C -0.189992054482602 N47B-T52B -0.190140369989766 W48B-W54B -0.19464264704552 W42B-W48B -0.201569600726564 I51B-Y57B -0.202212185554507 I51B-W56B -0.202867287408941 I51A-W56A -0.212675899435669 W42B-N47A -0.215634310055235 W42A-W48A -0.217255971849478 N53B-W46C -0.223234941121967 N47B-W46C -0.224062933906091 N53B-F49C -0.235004417277932 N47C-W42A -0.253561842233145 W48B-L55B -0.257817062907268 W46B-T52B -0.272049370019807 A43B-F49B -0.27396034095093 S44A-F49A -0.277154586906806 L45B-I51B -0.277691614307559 A43A-F49A -0.279500794650735 S44B-F49B -0.283922749275425 S44C-F49C -0.287440689136049 W46A-T52A -0.302056523029035 W46C-T52C -0.313592372609427 W46C-I51C -0.338756554030788 N50A-Y57A -0.349111895139402 T52A-I58A -0.352701816067584 W46B-I51B -0.356909329658974 W46A-I51A -0.356981801380635 T52B-I58B -0.362838190306865 T52C-I58C -0.369311938697114 F49B-W54B -0.371763084229381 N50B-Y57B -0.402893835219333 F49A-W54A -0.416258977645835 F49C-W54C -0.426787732542228