[Wed Aug 24 17:16:30 2016] >Input file: TM2MJ2ATD.pdb >TM segments: A10-24 MAIDEN score = -4.4169 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L17A-D22A 0.466492469049642 R11A-L16A 0.40975572267888 Q10A-E18A 0.303017710387662 F15A-C24A 0.297192536685881 F19A-C24A 0.252492686810738 R11A-F19A 0.0996968029340048 E18A-F23A 0.093836463388425 L13A-F23A 0.0556183425086036 L16A-C24A 0.0205701747327449 L13A-E18A 0.0176213022765257 R11A-E18A -0.0200572522156859 I14A-F23A -0.0277355375754507 L13A-L21A -0.0515214937019621 R11A-L20A -0.0902553007452025 L13A-D22A -0.0910540437049842 Q10A-F19A -0.0999615427503229 I12A-L21A -0.102181816490354 I12A-L17A -0.116894511758574 F15A-F23A -0.118864308094449 L16A-F23A -0.136631736326683 L13A-F19A -0.138670744239823 I12A-L20A -0.151508354018358 I14A-D22A -0.155059377193125 Q10A-F15A -0.17061376450471 I12A-E18A -0.185758112857342 L13A-L20A -0.19372546968746 I12A-F19A -0.201991000047323 F15A-L21A -0.206012105017741 L16A-D22A -0.217943893215777 I14A-F19A -0.226477242340906 F15A-D22A -0.227585246722446 L17A-F23A -0.246375946792519 Q10A-L17A -0.262673407820341 R11A-L17A -0.273430059798852 I14A-L21A -0.277593473119506 I14A-L20A -0.363016925972879 F15A-L20A -0.363199731236473 L16A-L21A -0.381995247923394 E18A-C24A -0.404486063866238 L17A-C24A -0.408350081396007 Q10A-L16A -0.521600681203164