[Wed Aug 24 17:23:08 2016] >Input file: TM2MOFCGD.pdb >TM segments: A7-41 MAIDEN score = -7.7056 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- BBeads pair Empirical energy ----------- ---------------- Y28A-K33A 0.369530725288614 H36A-Q41A 0.248956697357806 L8A-G14A 0.178182424547608 I30A-H35A 0.177741399099456 L23A-G31A 0.170909024571862 A12A-G19A 0.167687997247453 P10A-L17A 0.167472228865005 A12A-V20A 0.166795612572516 F29A-H36A 0.165725974987868 H34A-Y39A 0.158666910020395 L23A-Y28A 0.142736654107767 G19A-L26A 0.137055517659553 Y28A-H34A 0.136608949437864 A15A-I22A 0.132251218710294 H34A-E40A 0.127561754277544 V20A-Y28A 0.119197682230912 V9A-A16A 0.118658597119531 A12A-L21A 0.115563548123921 L8A-A15A 0.114934162808263 I11A-G19A 0.113133165534847 A16A-L23A 0.112391216769849 A16A-V24A 0.10972728034525 A16A-L25A 0.102958330698686 G19A-A27A 0.0996555121047369 L32A-A37A 0.098337367416141 L17A-L26A 0.0937214645579649 L25A-K33A 0.0876224825134528 L17A-V24A 0.0871794300661053 A18A-L26A 0.0820849290625403 L17A-L25A 0.0622010595040523 I11A-A18A 0.0615833646839989 A15A-L23A 0.0516940046538705 G31A-H36A 0.0461022105464852 A18A-L25A 0.0448260944408965 V13A-L21A 0.0444249980260727 L21A-I30A 0.0439118282187962 I22A-I30A 0.0382224635301132 L21A-F29A 0.0356375884741376 G14A-I22A 0.0312199304349434 V24A-F29A 0.0225852023046098 I30A-H36A 0.0179443472317899 K33A-Y39A 0.0061849944713166 L25A-H34A 0.000813175855373327 I11A-V20A -0.00106540128362553 A27A-H34A -0.00295285924052013 L26A-H34A -0.00571559237220809 G14A-L23A -0.00783910936104171 A18A-A27A -0.0119101441370004 V9A-A15A -0.0266830984607773 F7A-V13A -0.0267417918157626 P10A-A18A -0.028753863419162 A15A-V24A -0.0297594581181624 Y28A-H35A -0.0380339998410211 L21A-Y28A -0.0416167780539105 G14A-L21A -0.0446678631523714 L25A-I30A -0.0485872346596103 V9A-L17A -0.0518762247642979 V24A-L32A -0.0560745030160579 K33A-G38A -0.0663696710146215 V24A-G31A -0.0705618172993807 H35A-E40A -0.0745354674888247 V13A-I22A -0.076089919689748 V20A-A27A -0.0769514402650602 L23A-L32A -0.0772940883610751 L23A-I30A -0.0847263462608968 P10A-A15A -0.0885857500218672 G19A-Y28A -0.105777551144137 I22A-G31A -0.107130373733393 L17A-I22A -0.108230722587511 P10A-A16A -0.112284489326995 I22A-A27A -0.112385336387899 V20A-F29A -0.120004581023852 H35A-Q41A -0.127653202522644 F7A-G14A -0.128773438042322 F29A-H35A -0.132177403657112 L25A-G31A -0.159344567550528 A15A-L21A -0.165448639095318 F7A-A12A -0.16741291034857 A15A-V20A -0.170204344622196 I22A-F29A -0.183765098208094 F29A-H34A -0.185250481860466 A12A-A18A -0.186134253624847 L25A-L32A -0.187995498558881 I22A-Y28A -0.188705561144106 L26A-K33A -0.18930212847024 L23A-F29A -0.189855257931367 V9A-G14A -0.192936593296016 G14A-V20A -0.193106069715943 V13A-V20A -0.194631397754086 L26A-L32A -0.200158316798507 V24A-K33A -0.20759480722435 V13A-G19A -0.209877196616806 V13A-A18A -0.210854392683203 A27A-K33A -0.214589574666628 L21A-A27A -0.222408881956797 L26A-G31A -0.2316883031546 L8A-V13A -0.23549518714611 G19A-V24A -0.246158403490434 H34A-Q41A -0.262268975198218 A27A-L32A -0.264953903893459 A16A-L21A -0.281950371434243 A18A-L23A -0.292928214143609 A12A-L17A -0.297085500296342 A16A-I22A -0.305652812746464 A18A-V24A -0.326971292679114 G19A-L25A -0.331904588343979 I11A-A16A -0.362929711845348 G14A-G19A -0.38000853921204 I11A-L17A -0.40232444264718 V20A-L26A -0.407427403899031 L21A-L26A -0.413505371356336 V20A-L25A -0.439500746752206 L17A-L23A -0.455287975773122 V24A-I30A -0.466596383658532