[Thu Aug 25 00:23:43 2016] >Input file: TM2QFIATG.pdb >TM segments: A48-63_A123-136_A183-205 MAIDEN score = -5.1110 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I190A-L195A 0.800828703976123 G187A-Y192A 0.583497903851302 I186A-L191A 0.580509653060306 L184A-Y189A 0.579778536184085 L131A-R136A 0.572378405940577 G185A-I190A 0.494618170985063 I130A-R136A 0.467244424456688 L191A-R196A 0.413681825853203 L54A-V59A 0.41038648550304 I188A-S193A 0.40802843781586 S193A-Y199A 0.401131831183831 Y199A-S204A 0.378896216063633 Y192A-M197A 0.330202491702105 A183A-I188A 0.264029009046383 R196A-A201A 0.246734987991622 L195A-E200A 0.235637842692256 Y189A-R196A 0.213660637941985 S53A-S63A 0.205318811973179 G51A-V59A 0.19734989756867 S193A-V202A 0.184191395981921 A52A-L57A 0.179556762536748 M197A-L205A 0.175345914160399 A194A-Y199A 0.174889209640492 I50A-T55A 0.16927136777458 D49A-V132A 0.168102921642856 I129A-R136A 0.163994620471211 Y192A-E200A 0.162388452209604 Y189A-L195A 0.162248603309783 I190A-R196A 0.150402264200664 S53A-L131A 0.149764863762916 D49A-N56A 0.147647543449594 S53A-R61A 0.142801491094363 G185A-A194A 0.142561499676931 A124A-I130A 0.136064404957995 Y189A-Y199A 0.131898582123494 L195A-V202A 0.129796670738548 D49A-T128A 0.126915304544089 Y189A-A194A 0.12560945443756 Y192A-Y199A 0.113988817052455 I129A-Q135A 0.11259181746507 I188A-G198A 0.10829810964059 R196A-Q203A 0.10717911277224 Y192A-A201A 0.10485047253968 S53A-Q135A 0.101139802658921 S193A-Q203A 0.100634673175969 A52A-S193A 0.0982413668138704 G187A-G198A 0.098013601053931 V59A-A201A 0.0945005439961895 G198A-L205A 0.0853050881296542 V123A-I129A 0.085127362132603 G51A-V60A 0.0807112206913603 S193A-S204A 0.0806372658990595 S53A-L58A 0.0791819566739811 V60A-A201A 0.0745153403856413 S63A-E200A 0.0715515547174466 V48A-N56A 0.0705790036814138 G185A-S193A 0.0705161408412778 I190A-A201A 0.0678014882146614 I188A-A194A 0.0674669202177753 T128A-R136A 0.0594387603149735 V48A-T55A 0.0572977482413264 A183A-A194A 0.0570602641490356 I186A-S193A 0.0543837998192945 L54A-V60A 0.0538976730883682 L191A-Y199A 0.0528398307287095 V48A-L54A 0.0526959703837546 D49A-L57A 0.052120102968594 I50A-T128A 0.0490006597749066 A124A-L131A 0.0485570794461871 S53A-V132A 0.038246433118664 A183A-Y192A 0.036561279299177 A52A-M197A 0.0308668741953975 I50A-V59A 0.0296687158797466 V48A-L57A 0.0219865763594005 C127A-R136A 0.017045680615551 V123A-I130A 0.0156851354816325 L184A-Y192A 0.014521157752073 T55A-S63A 0.0101243286893822 L195A-L205A 0.00462467889887463 A124A-I129A 0.0039363827639578 Y192A-G198A 0.00391995033439962 D49A-Q135A 0.00326854191040971 A52A-V60A 0.00307252706614403 A183A-L191A -0.000552568868224412 G185A-L195A -0.00076508699751443 A52A-V132A -0.0102052285194538 C127A-F134A -0.0105339753392997 I50A-L131A -0.0112693363402396 V60A-Q135A -0.011621246809014 N56A-Q135A -0.013175385597576 S193A-E200A -0.0132551790359041 S63A-A201A -0.0147061698176163 L195A-A201A -0.0151845617437174 I126A-S133A -0.0154911702292702 S53A-F134A -0.0187695785069552 A194A-V202A -0.0234931360306794 A52A-Q135A -0.0238163183109168 G187A-R196A -0.0239706015897173 L125A-L131A -0.0255364563081023 D49A-I126A -0.0339448013928316 G185A-Y192A -0.0346055064964719 T55A-R61A -0.0366885547548095 Y192A-V202A -0.0378218381241053 I188A-M197A -0.0382365308713699 A194A-Q203A -0.039887737433741 V59A-S204A -0.0409692664232866 S53A-T128A -0.0416051496100503 Q135A-M197A -0.0446302968688395 T55A-Y62A -0.0473936317076915 S63A-S204A -0.0504468112481611 L191A-A201A -0.053330401855133 D49A-I129A -0.0578284922389596 N56A-A201A -0.0583906663416121 S53A-V59A -0.0600400889528707 L54A-S63A -0.0628394040719593 L57A-Q135A -0.0652839422892549 I190A-Y199A -0.0697313304454275 N56A-M197A -0.071791282975723 I126A-F134A -0.0755681877539196 R196A-S204A -0.0815898670962423 L125A-V132A -0.082148996346147 A52A-L131A -0.0823109144641565 R196A-L205A -0.082656034184311 D49A-L131A -0.0851716222580977 Y199A-L205A -0.088377291342743 N56A-R61A -0.0921776446319758 D49A-L54A -0.0927167800936957 L54A-Y62A -0.0935313701282101 I186A-L195A -0.0943690465923817 M197A-S204A -0.0990814528221828 G187A-A194A -0.0995179818252732 L184A-S193A -0.0996731467223269 N56A-V132A -0.102811018373564 L195A-Q203A -0.10727284649318 D49A-L125A -0.113922764352925 S53A-Y62A -0.119862302767547 R196A-V202A -0.122523985144076 L195A-S204A -0.122970251054948 E200A-L205A -0.12519077959737 T55A-V60A -0.126560827207299 I129A-F134A -0.126765291167974 L184A-A194A -0.129268993935321 I50A-L58A -0.14224729080757 L191A-E200A -0.143827082635654 A194A-E200A -0.147003590535323 G198A-S204A -0.149949594954435 Y189A-M197A -0.151549002435792 G187A-S193A -0.153664810029165 D49A-T55A -0.155873053175585 Y189A-G198A -0.159115414170449 I186A-R196A -0.162347172404201 V123A-T128A -0.164642064681835 A52A-R61A -0.165851142476134 G187A-L195A -0.167452432582598 D49A-L58A -0.167538528189087 G51A-N56A -0.168635045699839 A52A-L58A -0.16982731951288 G185A-R196A -0.171174146113695 A194A-A201A -0.172703955054495 L57A-Y62A -0.173287501570473 G51A-L58A -0.17390321927358 L184A-L191A -0.183573600754733 L125A-S133A -0.18421802846858 I126A-V132A -0.1876639501307 M197A-V202A -0.195081124115313 C127A-Q135A -0.195670761874284 T128A-Q135A -0.199028763886373 S193A-A201A -0.200666042127435 G185A-L191A -0.203502893051077 V48A-S53A -0.204781185699362 I130A-Q135A -0.207591625519676 I50A-N56A -0.207600169433206 M197A-Q203A -0.209127665205279 G187A-M197A -0.213156903363386 A52A-V59A -0.213989258811837 C127A-S133A -0.238241870345643 A183A-Y189A -0.239903115549697 I186A-Y192A -0.255867610398638 T128A-S133A -0.256420062724702 S53A-V60A -0.258437367957876 I186A-A194A -0.261161450390901 I190A-G198A -0.270420602387174 A183A-I190A -0.275259193915276 I190A-M197A -0.275772056422256 L54A-R61A -0.282430969835694 G51A-L57A -0.295275233851181 N56A-S63A -0.310517461406044 I50A-L57A -0.311520329432451 I188A-R196A -0.313562663642955 L58A-S63A -0.31934565712819 G198A-Q203A -0.32107477387685 L125A-I130A -0.321935614294802 L57A-S63A -0.328369793249419 L191A-G198A -0.338656965465619 I126A-L131A -0.354178878562275 N56A-Y62A -0.368818727465582 I188A-L195A -0.403710994444776 L184A-I190A -0.412711513632742 T128A-F134A -0.458747882469154 L191A-M197A -0.477740884696513 C127A-V132A -0.493761944394902 S193A-G198A -0.528039195138712