[Wed Aug 24 17:40:03 2016] >Input file: TM2VDFATD.pdb >TM segments: A35-42_A50-57_A89-95_A113-119_A133-140_A148-171 MAIDEN score = -2.8635 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L138A-D164A 5.8030232511598 S136A-S167A 2.0875061888201 I42A-I50A 1.88795286645884 F56A-I90A 1.27919198029986 L138A-L165A 1.26151273790073 L52A-T94A 1.21534383926305 I36A-F56A 1.21268647812707 F116A-W137A 0.883451971465198 W137A-L165A 0.823903891178457 K140A-F163A 0.737821271723531 F116A-L138A 0.72042940761443 E53A-D91A 0.694193574703435 L114A-L138A 0.683863927484868 I50A-T94A 0.672056566950917 F116A-Q135A 0.650132429231268 R134A-S167A 0.595949130342667 L138A-F163A 0.593119067991075 E117A-L138A 0.583093735433195 L149A-I155A 0.577164169744028 Y93A-G113A 0.562053564066747 A139A-L165A 0.556233799135754 Q148A-W153A 0.509652302261693 Y93A-L114A 0.488811325526014 L92A-F116A 0.481937907879646 F116A-D164A 0.479008084481815 S136A-L165A 0.474951640302125 L114A-W137A 0.465797001048887 L138A-S167A 0.444402945222977 I90A-F116A 0.437349835870599 R134A-L171A 0.433201350027859 W137A-N166A 0.405844445068738 G115A-K140A 0.405784472161606 Y93A-F116A 0.370038990158612 H35A-G55A 0.36513081340761 S118A-S133A 0.361954888348233 R51A-Y93A 0.361739712557672 L114A-A139A 0.352341043506825 Q148A-I155A 0.334254634752977 D41A-L52A 0.332929520753146 H35A-D91A 0.32365787244138 G113A-E160A 0.322257754783553 I42A-R51A 0.321419009554504 Y93A-K140A 0.314857210243807 E53A-Y93A 0.306265777390415 H35A-F56A 0.299266671683005 G115A-S167A 0.298025819168541 L52A-L92A 0.293189544312331 A54A-L92A 0.28617377399363 A40A-E53A 0.284323001203417 A40A-I50A 0.278304278364838 S133A-L171A 0.274699213591346 F116A-S136A 0.268755968807889 D41A-Y93A 0.268195197519561 G37A-F56A 0.263616332209319 A139A-S167A 0.26174924816879 R39A-Y93A 0.257995511496326 V38A-L52A 0.25721555446243 S136A-R168A 0.252168479300463 I90A-S118A 0.250897198199489 H35A-R89A 0.237181668201868 A40A-L52A 0.229501392733085 I36A-G57A 0.22108259774253 S118A-S136A 0.220831562921894 T94A-E117A 0.218756638373608 Q148A-P157A 0.216869556875784 G57A-I90A 0.216191492489531 G55A-R89A 0.215104575551005 L92A-S118A 0.213603585274035 G95A-L114A 0.212901097778861 G115A-V161A 0.208574637700545 Q135A-K170A 0.202461656043075 S133A-R168A 0.194416410803444 R39A-D91A 0.194227869758045 L149A-P157A 0.193355988499682 G115A-A139A 0.187753350003733 H35A-E117A 0.182155101711352 R134A-Y169A 0.180920204412834 D91A-R168A 0.175902806787934 L149A-Y154A 0.175353657836461 L92A-K162A 0.174064831928906 G113A-W137A 0.173609105337833 G95A-L138A 0.159206321890453 Y93A-F163A 0.1583596829886 D91A-G115A 0.157291346899132 D41A-N156A 0.15504490767566 D91A-N166A 0.153596102674118 Q148A-N156A 0.153249052027607 K140A-W158A 0.152216330323246 H35A-S119A 0.150412137035229 G55A-T94A 0.149406123237771 G55A-L92A 0.147164308526101 T94A-K162A 0.147096603932928 T94A-W137A 0.146188871263335 L52A-G95A 0.145358751984238 S119A-Q135A 0.143069467767679 G37A-I90A 0.141036119671426 E53A-G113A 0.140741570749192 L138A-N166A 0.140022513211559 F116A-S133A 0.138647459494377 S118A-K162A 0.137624353185035 I42A-Y93A 0.137204166620362 E117A-Y169A 0.136857860587516 Y93A-E117A 0.13537354907297 Y93A-E160A 0.134882546470354 R89A-E117A 0.13357411949262 H35A-E53A 0.131972279581243 S118A-N166A 0.130538238938811 G37A-E117A 0.127627186991442 I90A-Q135A 0.127137406470867 G55A-G115A 0.120413796414045 G95A-F116A 0.113997433315638 G95A-V161A 0.113222402721704 A54A-I90A 0.112812903218183 Q135A-N166A 0.112196408264224 S118A-D164A 0.112101766724239 G55A-S119A 0.111659092492414 K140A-S167A 0.109555966451747 E117A-E160A 0.108605091231568 A54A-S136A 0.107772238408518 E53A-E160A 0.106336279561195 I50A-L92A 0.105761975569257 L52A-K140A 0.104536957712562 G57A-Y93A 0.103420610819155 L92A-L165A 0.103095732110254 R134A-D164A 0.101721243112419 S119A-N166A 0.0976684291333214 Y93A-S118A 0.0936151852622329 G95A-K162A 0.0927046306059837 D91A-D164A 0.0926233600868835 R39A-G115A 0.0899486714246105 I50A-G115A 0.0897197280103372 I90A-S133A 0.0895772371738719 E117A-S136A 0.0889509647685438 L52A-I90A 0.0883151612604269 Y93A-S159A 0.0862311453355442 A54A-Y93A 0.08498889519228 L92A-A139A 0.0828816705505604 G37A-R51A 0.0818048367665081 R89A-R168A 0.0815885778098466 R134A-L165A 0.0814990240091461 I50A-G113A 0.0809275850627689 W137A-V161A 0.0808726720941657 R89A-S136A 0.0795267378807047 A54A-S118A 0.0782582105658216 R39A-N156A 0.076941437825027 S119A-W137A 0.0758055275801346 G113A-S136A 0.0734960822618791 S119A-R168A 0.0725273468871579 L114A-S167A 0.070833320500558 I42A-A54A 0.0697562492200507 G115A-L138A 0.0693632934459179 F163A-R168A 0.0693173206546183 D91A-F163A 0.0688556626770809 T94A-F163A 0.0682170397537672 H35A-S118A 0.0680647046521564 G37A-G115A 0.0677434055740609 G57A-S133A 0.0676451740285988 Q148A-Y154A 0.0668168802988234 G95A-E160A 0.0665526909753531 A40A-G115A 0.0665073118932376 W137A-S167A 0.0659092606024512 A54A-A139A 0.0650664176807454 A139A-R168A 0.0645548337357985 I50A-A139A 0.0642172444650115 W137A-K170A 0.0639821272598553 I90A-L138A 0.0639116993691085 R39A-A54A 0.063262482812533 G113A-N166A 0.0610321498305849 F56A-R89A 0.0609666293788472 A54A-R89A 0.0609095646407525 G57A-R89A 0.0607440127162597 G57A-L92A 0.0604869578499206 G37A-E53A 0.0593434521231191 V38A-T94A 0.058859359122339 G113A-L165A 0.0588151734725381 E117A-F163A 0.056824149644592 Y93A-S136A 0.0564746227213679 E117A-W137A 0.0562628585957121 L52A-A139A 0.0556829180921672 G115A-E160A 0.0536828808758709 L114A-K162A 0.0536491873880944 E117A-K170A 0.0528187042100563 E117A-K162A 0.0524684599401306 D91A-R134A 0.0507110423393948 Y93A-V161A 0.049543431140334 Y93A-W137A 0.0491443318918423 A40A-L114A 0.0482196009017493 L114A-L165A 0.0479212330241715 D91A-S167A 0.0479017509209105 S119A-S167A 0.0472830324889508 R89A-G115A 0.0470660591893566 D91A-K162A 0.0460130835431123 E117A-R134A 0.045480245532409 E117A-N166A 0.042721185015373 S119A-L171A 0.0421899213134067 F116A-V161A 0.0414688456481505 L92A-S119A 0.039805877944239 F56A-L92A 0.0391050672565019 T94A-L138A 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