[Wed Aug 24 17:52:05 2016] >Input file: TM2VPZCGD.pdb >TM segments: C943-965_C977-996_C1015-1036_C1038-1063_C1073-1093_C1100-1120_C1134-1151_C1154-1172_G2123-2145_G2157-2176_G2195-2215_G2222-2243_G2253-2274_G2280-2300_G2314-2331_G2333-2352 MAIDEN score = -143.1130 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- BBeads pair Empirical energy ----------- ---------------- L1033C-K1038C 10 T1148C-A1155C 3.46518519639608 L1056C-P1081C 1.15272649540789 A2273G-P2336G 1.01662653135715 T2158G-Y2215G 1.00183466041356 V953C-D988C 0.987984671615181 V2133G-D2168G 0.954251773030622 W2199G-V2234G 0.945947092793415 I2197G-Y2238G 0.901384704870404 L955C-L1087C 0.887111510735268 L1087C-L1160C 0.886391653659198 V2131G-R2347G 0.878333105399417 L2135G-L2267G 0.875367101536307 V951C-R1167C 0.875306980508016 L2236G-P2261G 0.874169049630257 L1075C-L2255G 0.865075000078862 I1017C-Y1058C 0.848283529388826 L2269G-L2284G 0.839827713582817 A2144G-W2226G 0.83817578733658 H943C-L1172C 0.833244853007946 A1093C-P1156C 0.810467544468612 P1059C-P1081C 0.798184809832964 W1019C-V1054C 0.797028138130822 W2199G-A2235G 0.791296080417348 W1022C-F1051C 0.78107585975976 T1030C-L1044C 0.780243213822555 W1019C-A1055C 0.767365838513431 V959C-Y980C 0.756933801315784 H2123G-L2352G 0.755078528012696 L2262G-L2287G 0.749162898088685 W2202G-F2231G 0.745257297306683 A964C-W1046C 0.743217385961894 T978C-Y1035C 0.725188377768681 P1016C-L1061C 0.718486163240169 V2266G-L2287G 0.714589594955674 L2267G-L2340G 0.714525925539085 L2132G-L2164G 0.707132121758367 P2196G-L2241G 0.696201224540012 V2266G-L2340G 0.696102870533487 W1150C-A1155C 0.694406359704771 Y1138C-L1166C 0.691797005904804 V1086C-L1107C 0.690578257542368 L1089C-L1104C 0.690066037840306 Y2318G-L2346G 0.687593381863327 L1082C-L1107C 0.683458590444466 P1103C-P2283G 0.682964269673885 L961C-L1049C 0.679982593279977 L2141G-L2229G 0.678606540292638 L1146C-A1158C 0.678241618329114 L1024C-A1055C 0.672195609190067 A1093C-L1101C 0.671668121645873 L1056C-A1084C 0.66797700472017 G1023C-F1051C 0.659578074051558 L962C-Y977C 0.645084422804563 L952C-D988C 0.639557182533164 A960C-L1049C 0.636239431458216 L1063C-M1076C 0.634884489785831 W944C-A1168C 0.634590889332238 L2243G-M2256G 0.633169973227829 L1089C-P1103C 0.630036084848656 L2236G-A2264G 0.629583736152954 A2140G-L2229G 0.627657360677136 L2142G-Y2157G 0.626654861583512 F2321G-G2345G 0.617460717932257 F1141C-G1165C 0.613991520751732 G2203G-S2232G 0.612936146732473 F1149C-A1155C 0.611545485327392 L2269G-P2336G 0.611451539661585 L2269G-P2283G 0.610845036171378 L2274G-P2336G 0.607070002220469 A2140G-F2231G 0.599234834488074 A960C-F1051C 0.598913530586753 P2239G-A2257G 0.598299261615307 L2269G-L2281G 0.597483139213147 V2131G-A2264G 0.596650463002502 G2270G-W2337G 0.594416027498693 P2239G-F2260G 0.594305837987186 W2124G-A2348G 0.593964409764451 I2171G-S2176G 0.583040212872829 L1033C-S1040C 0.579912900118349 V2139G-Y2160G 0.57104879344464 L1091C-P1156C 0.567214543495434 G2200G-Y2238G 0.565482623659476 W2202G-G2207G 0.565369362872088 F2329G-A2335G 0.565202647352173 V951C-A1084C 0.5651613836164 G1023C-S1052C 0.553866433016651 W2199G-Y2238G 0.552485050318586 A2127G-R2347G 0.551573976485372 V959C-A964C 0.549315628589566 F1141C-L1166C 0.54923642335935 F2321G-L2346G 0.548395514005257 G1090C-W1157C 0.546982667545239 H943C-V1171C 0.546336774688182 L1142C-A1162C 0.545960032083974 V2266G-L2284G 0.54292034979881 L2145G-A2225G 0.541238401211609 F950C-A1168C 0.539828570907259 L1061C-A1077C 0.539302329442437 L2292G-L2322G 0.537465109346586 R1042C-A1047C 0.537002207703438 L1034C-S1040C 0.535374258272651 F2130G-A2348G 0.534697149070949 I991C-S996C 0.531988418421776 L1089C-P1156C 0.530784258579705 H949C-I991C 0.529208570533072 L955C-L984C 0.528676271364599 A2127G-V2351G 0.526447061595813 W1157C-A1162C 0.524353105738827 I2165G-L2204G 0.522660270451549 W1019C-Y1058C 0.521753100366176 P1059C-F1080C 0.517002063733143 F2130G-D2168G 0.515861137647827 H2123G-V2351G 0.51395153311768 L2132G-D2168G 0.512755498918954 L2326G-A2338G 0.512305673532815 L1087C-A1163C 0.505842790095328 S2237G-F2260G 0.503731996435942 S1057C-F1080C 0.503656505114161 L961C-L1048C 0.501677776155876 L2135G-L2164G 0.500532211711826 A1077C-Y2298G 0.497587441456805 A947C-V1171C 0.496976566825132 F950C-D988C 0.496716049727546 Y1118C-A2257G 0.49643033589233 L952C-L984C 0.495851158370899 G1032C-K1038C 0.490849824231156 V1086C-L1160C 0.490647116119185 L1112C-L1142C 0.487631006308232 N946C-I991C 0.486211574154105 L1079C-S1111C 0.486185547122799 Y2160G-I2165G 0.486051783012071 W2337G-A2342G 0.486030849596386 G1020C-Y1058C 0.485043867335219 V1086C-L1104C 0.484203407667246 F950C-R1167C 0.481326861975404 L1026C-F1051C 0.481095893973137 L2204G-F2231G 0.481041862473503 H2129G-I2171G 0.480657639191499 F2130G-R2347G 0.480183030994644 A1108C-T1148C 0.479782028064737 I985C-L1024C 0.469541075818053 S1057C-A1077C 0.465865593759584 A956C-Y980C 0.460554154212059 L2204G-A2235G 0.459850781760189 V2266G-A2343G 0.458586213971363 V2266G-A2288G 0.458231374311102 A960C-Y977C 0.455473200474672 L2206G-F2231G 0.454848421854822 L1061C-M1076C 0.454700912234343 V2133G-A2264G 0.454451271070535 A2140G-Y2157G 0.454134271132917 A2140G-T2158G 0.450947869779725 L2322G-A2342G 0.450495755595755 L2271G-P2336G 0.446238608434946 L2267G-A2343G 0.445635426395443 I985C-F1028C 0.443721446724856 N2126G-A2348G 0.441574581101316 V1086C-A1108C 0.441483765005655 A2288G-T2328G 0.441318893753577 L1024C-F1051C 0.438351799067587 L2241G-M2256G 0.437511825384377 L2259G-S2291G 0.436718664115023 F1141C-L1161C 0.436343651735045 A981C-F1028C 0.429776086658235 R1042C-L1048C 0.429019658525711 N2126G-V2351G 0.427608389738366 A2136G-Y2160G 0.425608929175109 L2255G-Y2298G 0.425482007067237 L982C-F1028C 0.423120549446215 L2236G-F2260G 0.422805942682504 V953C-A1084C 0.422694852435746 L1056C-F1080C 0.422290078794684 T2210G-A2227G 0.42005575284919 L2265G-L2287G 0.419797390901989 A2273G-L2281G 0.418344645557694 A2140G-L2228G 0.417937030991562 V2133G-A2235G 0.416923478248822 L2274G-R2333G 0.413488935461739 Y980C-I985C 0.413429794868795 F2321G-L2341G 0.409435496940082 L2141G-L2228G 0.40850130045643 L1034C-Q1041C 0.406040120471695 A1077C-L2294G 0.404918123891431 A1077C-L2297G 0.403339922677963 L2162G-F2208G 0.400877147496566 G1023C-V1050C 0.398681502309088 V959C-T978C 0.396435731401905 L2243G-N2253G 0.396050075056857 A956C-I985C 0.393641206195302 G958C-S1052C 0.393179215200819 P2283G-A2288G 0.392746045221275 P1059C-A1077C 0.392506621093881 L1085C-L1107C 0.392303874484262 T1030C-L1048C 0.391604983459232 H943C-S996C 0.390999869276035 V2133G-L2164G 0.390090280744761 S2237G-A2257G 0.388357922522379 L1075C-Y1118C 0.387566945765228 T1030C-A1047C 0.38730553586374 I985C-F990C 0.386725685906128 G2203G-F2231G 0.386586070136475 V953C-A1055C 0.385356903937879 A960C-T978C 0.377514718393106 L2128G-A2348G 0.377390629753951 A1092C-A1155C 0.376984635519892 A1100C-A1108C 0.374356493626536 A1134C-A1168C 0.374116707671155 L1104C-T1148C 0.372947548298745 L2324G-G2339G 0.370860977293198 L2262G-A2290G 0.370125445457802 L1024C-S1052C 0.369518811283052 T2263G-L2287G 0.368442351081661 L1063C-N1073C 0.368002831676336 H2123G-S2176G 0.364838312373632 L948C-A1168C 0.36421403176768 T2263G-S2291G 0.364142443049268 P1103C-S1111C 0.363455499306326 L1114C-G2258G 0.363396574987001 L965C-A1045C 0.363259058840109 A981C-A1055C 0.363016333410862 L2324G-A2342G 0.362995943715217 T1083C-L1107C 0.360312096285537 Y2298G-G2319G 0.358831571804277 L1114C-A2257G 0.358586931665071 A2144G-L2229G 0.358035808760873 F2321G-A2343G 0.357544268262961 Y2318G-V2351G 0.357120702610589 A2272G-A2335G 0.357118354636246 Y1138C-V1171C 0.356825831207024 L1117C-A2257G 0.356132160878845 L2241G-A2257G 0.355799863951561 L1144C-A1162C 0.355525456423104 A960C-L1048C 0.354435681055533 L2284G-T2328G 0.354126901534046 T2210G-L2228G 0.352986742933144 L1082C-A1110C 0.352973091442532 A1110C-A1163C 0.352870299563421 G2315G-L2320G 0.351158166301244 G1078C-L2294G 0.350315461044368 G2327G-W2337G 0.349289698479367 P1016C-P2299G 0.342568620888262 P1059C-M1076C 0.342064222370557 G1090C-L1160C 0.340585352441531 V1086C-A1163C 0.340094653438983 A956C-L982C 0.33994219272661 G2138G-S2232G 0.337408163929096 G2134G-L2236G 0.331965560781854 P1103C-A1108C 0.330853626140619 G1109C-A1163C 0.330311974563127 G954C-L1087C 0.32994940654604 A2127G-G2134G 0.327736014613042 A1134C-G1165C 0.32771480074746 G2137G-A2264G 0.326460310481127 W2198G-P2239G 0.325758999516302 A2136G-G2205G 0.325748668411838 F2316G-F2321G 0.325641131209879 G954C-L1085C 0.324996819289384 G1031C-A1043C 0.324968008755748 G2134G-L2267G 0.32381004597542 G2138G-L2267G 0.321992764407387 S1052C-P1059C 0.319611046060187 G1027C-F1051C 0.318137211036898 T1148C-G1159C 0.31731690461878 Y2157G-G2207G 0.316972330058653 G2270G-L2340G 0.316704378178652 A956C-G1020C 0.316414920003969 G2207G-F2231G 0.315599428302216 S1111C-A2290G 0.314896570872416 A2314G-A2348G 0.314609222370306 G954C-G1023C 0.313606715132632 A960C-G1025C 0.312853918944133 G2289G-A2343G 0.312069618182342 G2270G-G2325G 0.311475997595022 L2135G-L2265G 0.311055556415226 H2129G-G2240G 0.311032816058685 R2347G-L2352G 0.310812762742839 G1060C-G2254G 0.309971818092077 H949C-G1060C 0.309620268449028 T1083C-S1111C 0.308479889775155 A1110C-S2291G 0.307962309050799 L2324G-L2341G 0.307806264758565 G2289G-A2342G 0.307614963106649 G2212G-A2225G 0.307470254166609 A981C-G1023C 0.307277336849679 P2239G-M2256G 0.306953970937097 L1087C-G1159C 0.306694571902443 G1060C-F1080C 0.306434518629831 G2134G-G2345G 0.30573270414208 V2133G-I2165G 0.305337206732162 A947C-A1163C 0.305259763711538 G2240G-F2260G 0.304459215224886 Y1118C-P2239G 0.303923094256376 A947C-G954C 0.303781495794017 L2265G-L2284G 0.303472948557245 T2210G-L2224G 0.303369588675797 L955C-A981C 0.303336217521396 G2270G-A2342G 0.301240542529376 G2134G-T2263G 0.301192641898027 L955C-L1085C 0.300996780534837 A2201G-S2232G 0.300627052808355 V1086C-L1091C 0.300267016937179 S2195G-G2240G 0.300187686074699 W2124G-V2351G 0.299918499472774 L2271G-A2280G 0.299809564451219 L1089C-L1101C 0.29946177839259 A956C-G1025C 0.298690673584538 A963C-G1032C 0.298569430007829 G2138G-S2237G 0.298494340562665 A2314G-L2349G 0.29830769189152 A2144G-L2224G 0.297979051183067 G954C-G1165C 0.297297553599819 A2295G-L2322G 0.297214200631873 L989C-A994C 0.297200455947545 A2127G-L2349G 0.296910726644981 G1090C-A1162C 0.296070836084088 L2135G-A2140G 0.296025416618773 A2143G-L2228G 0.294830656555705 G2137G-G2211G 0.294634806942583 L2320G-A2342G 0.294401153010186 L1144C-L1161C 0.293702692509434 L1085C-L1104C 0.293637878125945 L1140C-A1162C 0.293459950356197 V951C-A1163C 0.29156086367842 A1115C-L1142C 0.29131625476399 L2265G-G2289G 0.289386902560104 T2263G-P2336G 0.289357945620847 G2137G-L2233G 0.289259818634747 S1015C-G1060C 0.28918728658533 A947C-L1169C 0.289089427231739 G958C-G1023C 0.288907123010449 G1074C-Y2298G 0.288853733135744 G2270G-L2287G 0.288259604554584 G1032C-A1045C 0.288137222079311 A1021C-S1052C 0.288038351448938 A1115C-G2254G 0.288033904785604 G1139C-L1146C 0.287867244326186 G2134G-L2340G 0.287812510486914 L1143C-A1162C 0.287768636599246 G1109C-A1162C 0.28762397067652 L2323G-A2342G 0.287513763503714 G1074C-A2295G 0.287232616210192 T2328G-A2335G 0.287212543307176 G2258G-L2265G 0.28707085120019 R1167C-L1172C 0.286519365670703 L961C-G1031C 0.286454257631171 G954C-L1056C 0.286143610860892 G2211G-L2229G 0.286058798029136 A2136G-L2162G 0.285956582916703 L2169G-A2174G 0.285610816986682 G1078C-L2262G 0.285264093402831 T2158G-L2214G 0.285166946251525 V953C-L984C 0.2844958926584 L1101C-G1159C 0.284341479664678 G2315G-L2323G 0.284222799430549 G957C-L1089C 0.283746602024951 P1119C-P2196G 0.283546270807277 L1082C-A1108C 0.283459144571575 L2259G-R2347G 0.283384329580042 T2125G-I2171G 0.283291182667655 L2320G-G2339G 0.283180826926484 L2206G-A2227G 0.28312332855197 L1144C-G1159C 0.282146313869161 G1074C-G2240G 0.281477861721424 G1078C-L1085C 0.281371791867404 L2267G-A2272G 0.281292504994232 L1075C-A2257G 0.281045112210114 L1085C-G1109C 0.281016280894625 G1060C-A1084C 0.280900335527724 A1077C-L2255G 0.280870929699182 G957C-A1084C 0.280774785717915 G2137G-L2269G 0.280752260264603 P1059C-Y2298G 0.280561196397981 L2262G-A2288G 0.280241420580546 L2259G-G2289G 0.279748294445001 V2139G-Y2157G 0.279202606076103 V2266G-V2286G 0.279055050449865 L1146C-A1155C 0.278836436113096 L955C-A960C 0.278776970123648 L2135G-A2161G 0.278712198760241 L1079C-G1109C 0.278562827821049 A2161G-G2205G 0.278224453638402 G2138G-G2203G 0.278131480606012 A963C-L1048C 0.278099781903068 S2237G-P2261G 0.277898700225462 A964C-L1044C 0.277873758559003 L2132G-I2165G 0.277702400457109 L2320G-G2327G 0.277561182101637 G2134G-G2258G 0.277553419082985 A956C-A1055C 0.277512371318617 T1083C-P1156C 0.276949602968728 N1073C-P2299G 0.276590185929432 L948C-R1167C 0.27641592092961 L1116C-G1135C 0.2758449669919 L2128G-R2347G 0.275610584600833 W1022C-G1027C 0.275431229060499 L1082C-G2258G 0.274844057117859 L2259G-G2345G 0.274815038509945 A1077C-A2257G 0.274780442844561 L1079C-R1167C 0.274604992282502 G2212G-A2227G 0.274257963008751 G2200G-L2241G 0.273003309727418 G958C-L1087C 0.272768380885566 T2328G-L2334G 0.271388320155669 G2134G-D2168G 0.270869095618994 G2134G-L2265G 0.270508574156306 A1115C-G1165C 0.270127879942363 A1084C-A1163C 0.270120780223097 V2139G-A2144G 0.26942206188923 G2240G-M2256G 0.269273285538462 G954C-T1083C 0.269218187436773 G954C-D988C 0.268556655256502 Y977C-L982C 0.268158073690107 P1119C-N2253G 0.267694391660946 R1105C-F1149C 0.267631387381975 G1145C-A1164C 0.267509855121122 V953C-L1056C 0.266867977719357 A2264G-A2343G 0.266225514077955 V2133G-L2236G 0.266212595099007 G1135C-L1140C 0.265757935100343 G958C-L1085C 0.264663152712109 G2240G-L2262G 0.264388478153955 A963C-R1042C 0.263984369760511 G2254G-L2294G 0.263633273637718 G1039C-A1047C 0.263569881587311 Y1138C-L1143C 0.262763991533451 Y1118C-G1139C 0.262020373372433 G957C-G1031C 0.261818810831921 Y1035C-R1042C 0.261558847581059 W2199G-G2207G 0.261094327348876 A956C-M983C 0.261086212857824 G2211G-W2226G 0.26056158701761 S1057C-P1081C 0.260224305673433 G958C-S1057C 0.259759997759908 G1078C-G1109C 0.259435237384438 A2143G-A2272G 0.258623633011309 G1078C-L1107C 0.2581710211038 F2170G-E2175G 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