[Wed Aug 24 18:25:39 2016] >Input file: TM3D9BCGD.pdb >TM segments: A8-27_A337-357_A362-386_A391-412_A439-459_A466-492_A543-562_A868-891_A974-994_A996-1018 MAIDEN score = -98.3682 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- BBeads pair Empirical energy ----------- ---------------- I983A-M1008A 1.56610710955242 I19A-L377A 1.25056299145105 V448A-V884A 1.21714940068889 L989A-Q1000A 1.04927176899736 F458A-Y467A 0.97494650912017 I19A-V374A 0.944522586004155 L989A-N1001A 0.875542807985012 G444A-C887A 0.871778511503459 M20A-L377A 0.868431971361009 I991A-N1001A 0.758027742708381 V454A-R468A 0.707476301063375 I991A-S997A 0.701503260680037 K342A-A347A 0.694665481250675 V406A-T978A 0.685793970830671 Y554A-L559A 0.67098474009212 I27A-F380A 0.668433615972095 E346A-V351A 0.649772179912888 F459A-Y467A 0.648596468603834 F352A-T369A 0.645031862082512 L405A-M478A 0.640180179025833 A485A-P490A 0.636270932143788 L989A-V1003A 0.635346079265052 A22A-L377A 0.633598312158656 V412A-T489A 0.632805686177467 P9A-L488A 0.629940313597691 P9A-L492A 0.627801774414869 A401A-V406A 0.625745793915175 A451A-L881A 0.624500323448856 V990A-A1002A 0.623136604271689 L376A-A477A 0.62065918294677 I402A-D407A 0.619080782223765 V375A-L480A 0.613478771788216 A22A-F380A 0.607210412851747 F396A-A401A 0.603485699951565 W13A-I487A 0.603207533077253 P988A-Q1000A 0.59948657663094 V884A-A889A 0.599020351848841 A457A-F470A 0.596298885604869 A446A-M478A 0.586445388727335 A371A-V406A 0.58120841604382 I337A-T392A 0.580436056021732 L989A-S997A 0.576337905439275 Y356A-F362A 0.573583566638236 V452A-Y877A 0.570243594999831 A347A-L984A 0.559421372772332 I975A-T1015A 0.558554011662547 F352A-T365A 0.553179150701161 I983A-M1011A 0.551978109258638 F458A-L876A 0.545586489221497 M398A-T473A 0.538505346767678 D408A-A485A 0.536329648524989 D408A-V482A 0.531538847722132 V412A-A485A 0.531120862827047 A347A-F982A 0.530801801127806 M456A-L876A 0.529160645837464 L344A-V399A 0.526536903228818 I445A-S450A 0.522019597810937 D407A-P974A 0.514533573200068 I337A-N391A 0.512765910288783 A347A-V399A 0.506063291933639 L350A-A981A 0.502526356051108 V351A-Y356A 0.494074195557853 P9A-P490A 0.483339154390722 L404A-A477A 0.482543480661241 S875A-S880A 0.480439281473455 V382A-S476A 0.475953254361464 V341A-E346A 0.473691941690124 I348A-T369A 0.465672286903387 I367A-T489A 0.464024619924985 P368A-I410A 0.452231557708462 I348A-G985A 0.452047341594979 T394A-F470A 0.447165507408413 G403A-F982A 0.441580299787563 F11A-I487A 0.44100496009624 S979A-L984A 0.435377652425266 F885A-A890A 0.43453757106211 S450A-V475A 0.433194753942314 A371A-V484A 0.433098494204822 I367A-L492A 0.431842179869617 T1005A-G1010A 0.431024911541831 L393A-F470A 0.425436778344189 I410A-P974A 0.419623374419334 G397A-I474A 0.419083735892091 A409A-T489A 0.41848384034449 F453A-F470A 0.418416664333869 L393A-R468A 0.418239567232494 L404A-S481A 0.41786104517879 I445A-M478A 0.416794194139213 T379A-A384A 0.40466340220587 I410A-M977A 0.404193837487679 S979A-M1011A 0.402766487780534 V475A-L480A 0.402656958639211 Y877A-I882A 0.392643389092318 P988A-N1001A 0.391681439449724 S471A-S476A 0.387656771388434 V448A-L888A 0.386303712406323 A347A-V986A 0.386194384909866 F458A-R468A 0.384102312166514 A12A-A491A 0.38195788095262 A446A-A479A 0.380330124105191 A401A-A479A 0.378323251859019 M398A-I474A 0.375836312334423 A457A-A873A 0.374905037594235 L393A-I466A 0.373691752184296 V986A-V1007A 0.371010713497322 T343A-G985A 0.370587098066618 L976A-T1015A 0.370446389462006 P455A-L876A 0.369658216757205 L480A-A485A 0.367911239433554 F380A-A385A 0.367061402852434 G24A-L377A 0.365775810782753 V372A-V406A 0.365570005406194 I991A-Q1000A 0.364015509700696 V372A-L377A 0.363100678970466 L350A-G985A 0.361874048253312 L868A-A873A 0.360247321287171 L989A-T1005A 0.360181603386438 V986A-M1008A 0.360012120226363 V345A-L350A 0.359377393529891 L404A-M478A 0.358332647122499 V990A-V1003A 0.358148414233895 V351A-L980A 0.357642595740874 S481A-P490A 0.357333098086661 P368A-P373A 0.357061546008051 V990A-N1001A 0.356605905999395 W13A-L488A 0.355877425710763 P373A-S476A 0.351040051670899 L405A-A477A 0.349544406854756 F453A-I474A 0.349381830744583 F453A-S471A 0.349371220849279 E346A-T369A 0.349343913065318 L976A-A981A 0.348634827475787 A446A-A485A 0.346964403288876 A22A-G378A 0.346756994064453 I547A-M552A 0.346061604938127 V448A-C887A 0.34358700614623 I402A-F982A 0.341273398268247 L449A-V884A 0.339721516444171 A364A-A371A 0.337980606099023 V345A-M355A 0.336433635386711 M987A-G1004A 0.33578230652567 I337A-K342A 0.335152928496254 R468A-I474A 0.334970983985309 R8A-L488A 0.334353593689956 S476A-S481A 0.33248506738904 M355A-I410A 0.332108562961126 L350A-M355A 0.331446864783038 L376A-M398A 0.330718537850924 V448A-F885A 0.328718295696939 A371A-G403A 0.326612467764941 V411A-M478A 0.325514571310138 S997A-A1002A 0.325328862139509 K342A-Q1000A 0.324842375591662 M20A-G378A 0.324064881998431 T343A-T993A 0.323502229994773 I19A-V375A 0.322687359825163 A16A-S481A 0.322391079799615 T379A-T473A 0.321773389405156 L350A-L984A 0.321593356519636 V443A-V482A 0.321212506696785 S562A-A1002A 0.320989862920849 M456A-V884A 0.320154915831697 A371A-A491A 0.32013215865511 G1010A-A1018A 0.318657482134474 R468A-T473A 0.315495281659764 G985A-G1009A 0.314060199715473 G397A-F470A 0.313960628666945 E346A-G985A 0.311744722088374 A451A-A457A 0.309927832016163 D408A-V443A 0.30964830748243 I337A-M395A 0.307759488376905 G998A-G1006A 0.307649931937633 I983A-V1007A 0.305413050012645 W13A-P490A 0.301728363861927 P9A-I487A 0.301470262540543 I19A-G24A 0.301025854945095 V412A-P490A 0.299492832612289 L25A-A381A 0.298522275348259 A371A-L488A 0.298298438458331 M456A-Q872A 0.296547402408076 V448A-V883A 0.296294674671791 L483A-L488A 0.295864884426397 P455A-T473A 0.295627308202527 L989A-A999A 0.295475020654644 G985A-G1006A 0.290782288814658 L21A-A26A 0.290426348119307 L366A-A371A 0.290151149870522 T379A-A477A 0.289287632025376 I548A-A553A 0.289013596280393 M20A-V374A 0.288711483494231 S561A-G870A 0.288173309545078 V990A-T1005A 0.286550876745869 A26A-L377A 0.286421432149628 G440A-L486A 0.286000103336963 N1001A-G1009A 0.285879448283235 A371A-A477A 0.285855798614524 V375A-S481A 0.285784640229289 G378A-L483A 0.285415499048563 L989A-A1002A 0.283995954022495 I17A-A22A 0.283952638673552 I472A-A477A 0.283717285840191 L405A-S481A 0.281534039556431 V341A-V399A 0.281335954850177 A441A-L891A 0.279723641207732 L486A-A491A 0.279428239596152 N391A-F396A 0.279004385760307 A26A-L383A 0.278904814148635 L984A-G1009A 0.278185839877387 V351A-V406A 0.278050920777295 M398A-R468A 0.276327269131562 T1013A-A1018A 0.275846474883874 F453A-I472A 0.275223134710737 V399A-D407A 0.274725887213619 V372A-L405A 0.274346058098257 P373A-T489A 0.27236213120037 V354A-L980A 0.272155347796719 G440A-L888A 0.271458410664226 I19A-A381A 0.270191172932671 F453A-V475A 0.268209027294452 L400A-G1006A 0.267829343779842 P455A-Q872A 0.267477042992258 V351A-D408A 0.266046347230454 G444A-L891A 0.26469616723874 M456A-S471A 0.263904474901621 V411A-P974A 0.263821860519473 A16A-A491A 0.26311867815639 S979A-G1009A 0.262374422242652 G1006A-A1014A 0.260158730220706 G403A-T978A 0.259906570007074 T978A-T1013A 0.258562960728892 A1002A-G1009A 0.257194700231655 Q439A-S481A 0.256271335962132 R8A-L492A 0.256029927541245 L442A-V482A 0.255515389777966 L353A-G985A 0.254356595029009 D407A-M977A 0.25400088780277 T343A-T394A 0.252917132485939 A371A-L405A 0.252595526857412 F352A-L366A 0.251336949239649 M20A-L25A 0.249000213829881 L442A-S481A 0.248366055433971 T343A-T392A 0.248342489873933 S992A-Q1000A 0.245408685382055 V374A-V484A 0.245302831137475 D408A-L442A 0.244008824552879 L350A-P368A 0.242268214898757 V374A-D408A 0.241314596802576 L376A-T394A 0.240786340730994 T369A-L488A 0.240123225764677 T343A-P373A 0.239736787309751 P9A-L486A 0.238077721752246 D408A-M447A 0.23793201612946 E346A-P373A 0.237014095096306 L353A-T978A 0.236957118621422 A457A-I466A 0.236693429827331 A371A-A409A 0.236114068256775 L404A-T473A 0.235742177257538 A999A-G1006A 0.235643269607068 P455A-Q469A 0.233709564703848 P455A-L881A 0.233536234784125 A401A-A981A 0.231887125043119 V399A-V1003A 0.231712476822647 V354A-I975A 0.231547068878474 F459A-Y877A 0.231143401535282 I402A-V475A 0.230619460005007 Y356A-P974A 0.230202726894947 I19A-V484A 0.229512444390532 V375A-D407A 0.22884742882298 M355A-A364A 0.227922017095405 T369A-L492A 0.227487933017808 I983A-V1003A 0.227477363344187 F470A-V475A 0.227052010000289 D407A-V443A 0.226299047488746 L383A-S476A 0.222724041241943 S875A-L881A 0.222531688362976 A451A-I879A 0.222425627755841 I348A-G403A 0.221701403183498 V452A-I472A 0.220045471325032 G397A-G985A 0.219339685097138 N391A-G996A 0.218916065701091 G24A-V375A 0.218828867503026 A409A-S979A 0.217815476708186 Y545A-V1016A 0.217783956543258 Y356A-A981A 0.217480496779656 A347A-A981A 0.217393974783643 Q439A-P490A 0.216904023079269 A446A-S471A 0.216450617566863 L353A-P368A 0.216228077873575 M395A-R468A 0.215928090686732 P368A-T489A 0.21571308051971 V454A-I472A 0.215497365568021 I15A-M20A 0.215247572588062 E346A-V986A 0.21506130660265 P373A-L400A 0.214776665954068 M395A-V986A 0.214356505564619 V406A-G985A 0.213652067588536 Y545A-V550A 0.213481663396962 M977A-V1016A 0.212649989922247 L383A-I472A 0.212214586816145 M398A-Q1000A 0.211743600568952 V372A-L480A 0.21093243095005 L980A-V1012A 0.210543742915828 T343A-G996A 0.210263434644936 L404A-V475A 0.209846372024485 L21A-P373A 0.20918042390919 F352A-L357A 0.208921746213983 H338A-T394A 0.208426848894902 V351A-D407A 0.208209329906004 V484A-T489A 0.207920127891553 F982A-G1006A 0.207732830652726 L344A-V986A 0.207292744833818 G870A-Y877A 0.207224074298305 G378A-V484A 0.206349051030418 V399A-F470A 0.206314572018964 V443A-L891A 0.206290007457148 P368A-D408A 0.205986470014871 V482A-L488A 0.205812895984014 V341A-M987A 0.205580969676298 A457A-S880A 0.20541244460545 M456A-F470A 0.204770415661047 V354A-M987A 0.204040733495091 T343A-I348A 0.203804372353411 A401A-S979A 0.20321536057871 M20A-L383A 0.202787944824265 L383A-M478A 0.20254605941638 D407A-V484A 0.200434317370327 V341A-G397A 0.199857980667671 G403A-T473A 0.199731810566526 T365A-T978A 0.199563359567994 S562A-A999A 0.199403435484804 Q439A-T489A 0.19932048736218 P368A-V406A 0.199016808739715 V549A-Y554A 0.198701921221799 E339A-T394A 0.197848462570719 T392A-I474A 0.196448396415414 T394A-Q1000A 0.196303346412366 A441A-S481A 0.195361776292393 S562A-G870A 0.194760295223561 I15A-T379A 0.19293587886127 T978A-G1010A 0.192718138754542 H338A-T993A 0.192671530464492 D407A-M1011A 0.192155092951417 L400A-N1001A 0.192116671116694 A401A-D408A 0.191485883182715 F453A-V884A 0.191060300760916 L980A-G985A 0.19005757619132 A477A-A485A 0.190056239747721 T365A-A981A 0.189854799513949 A371A-G378A 0.189798331950743 S979A-P988A 0.189609592094446 V354A-L976A 0.189365591153336 I879A-C887A 0.189053048863974 M355A-V412A 0.188591703948569 L21A-V374A 0.188340721218557 T369A-A485A 0.188001605697484 G985A-N1001A 0.187036940193662 V452A-L881A 0.186198757375559 T978A-I983A 0.1857243583353 V354A-M977A 0.18567646118461 T993A-A1002A 0.185579854796105 F982A-M1008A 0.184976467607925 V452A-L876A 0.184205168429695 N871A-Y877A 0.184178277548238 G397A-G998A 0.18376350079809 L366A-P373A 0.183061323107949 T369A-P490A 0.183009187446153 A16A-L488A 0.182998887550754 V351A-L357A 0.182743982307039 V412A-I487A 0.182688661597602 P560A-G1006A 0.182669630477199 V399A-M1008A 0.182626778758776 M395A-V475A 0.182092375110368 L400A-V1007A 0.181830402654143 F386A-T473A 0.181788160481045 A381A-T394A 0.18081806446571 M20A-S476A 0.180648857812977 I337A-G996A 0.180078913709153 A457A-Q469A 0.180048596365925 H338A-S997A 0.179869897169385 P455A-S476A 0.179779691994624 S450A-S875A 0.179650506357297 V448A-L886A 0.179570536739682 A26A-F386A 0.179435330214254 L383A-G397A 0.179199205368721 I337A-T993A 0.178627559460922 G440A-C887A 0.178622147059531 M398A-D407A 0.178513646963245 G444A-L483A 0.17848973687251 S450A-Y877A 0.178233716966628 P988A-G1009A 0.177626563293712 G378A-A477A 0.177585485297324 A371A-T489A 0.177561368421937 D407A-T489A 0.177370961921794 V340A-L989A 0.177214560091005 M395A-G1004A 0.17708661906493 D408A-A441A 0.17702105865735 A371A-T379A 0.176760420943548 G440A-L891A 0.176740265363951 M977A-F982A 0.176437036318464 A479A-V484A 0.176363165110921 S979A-V1012A 0.176246433460927 M456A-S476A 0.176158926827206 V351A-I370A 0.17585239105048 S869A-Y877A 0.1751576768523 S979A-T1015A 0.174284267700229 L350A-P988A 0.174156467725022 A385A-I472A 0.173760247868672 L449A-S481A 0.173585153811628 M447A-V884A 0.172699710616059 L404A-S471A 0.172646468877655 T343A-T1005A 0.172541395225071 F352A-F362A 0.171433249262263 M355A-G985A 0.171070150749519 S992A-M1008A 0.170419848765189 N391A-S997A 0.170371588053625 L393A-G996A 0.170338183311459 M398A-Y467A 0.170116439791479 V351A-V399A 0.1698201649184 I975A-L980A 0.169638678035397 A16A-T369A 0.16952575044193 V454A-I466A 0.169096498972102 I879A-V884A 0.169067758560623 K342A-T392A 0.168934657227431 M987A-G1010A 0.168890601636193 G378A-L480A 0.168820073083835 V14A-V375A 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