[Wed Aug 24 18:31:01 2016] >Input file: TM3DDLATD.pdb >TM segments: A18-35_A50-64_A92-105_A125-141_A152-166_A195-209_A211-244 MAIDEN score = -48.6988 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L129A-P162A 1.73762267076394 L126A-I166A 1.25550625099098 L104A-K240A 1.14990638072633 M133A-S159A 1.14541906230196 L98A-I134A 1.0995605726693 F31A-F57A 1.03564852638366 A130A-P162A 1.00345936155443 P139A-R152A 1.00172977749753 M27A-V56A 0.87139928014674 H62A-R93A 0.855295017489693 T105A-L126A 0.844016154995554 L129A-W165A 0.84325254995981 W200A-A239A 0.840018430363819 F20A-T233A 0.809964077143579 L136A-W155A 0.775342905032731 V24A-F64A 0.767306517969602 L129A-I166A 0.749629485358647 W97A-I134A 0.744473620566902 V55A-L103A 0.740988606220294 L136A-L158A 0.722512129636853 T23A-T233A 0.721713980747126 L136A-S159A 0.719543265907937 W200A-A235A 0.715904612514137 T23A-V237A 0.71344239213842 L196A-Y243A 0.690560504556168 M27A-F57A 0.671434354812382 T28A-V56A 0.663999420932694 V101A-G127A 0.659520228094407 V24A-A59A 0.632331011095365 L195A-Y243A 0.626950595458915 F31A-V56A 0.614193944501102 A130A-F163A 0.595550238170278 P102A-F128A 0.572159763134046 V24A-Y61A 0.570295681325947 M27A-A59A 0.562944206033795 L195A-A239A 0.560168590353917 M133A-F163A 0.558885163891361 S52A-L104A 0.544640124695479 I58A-T100A 0.543352276493184 D96A-V101A 0.528875117231831 L129A-F163A 0.526738389509795 M19A-T233A 0.520876024795496 P102A-L129A 0.520331090872711 D236A-A241A 0.518715351653541 F31A-L54A 0.518040863379571 F202A-A235A 0.516584041870864 M27A-A241A 0.515078591023939 L132A-S159A 0.501702639351076 T28A-F57A 0.496795577183973 L238A-Y243A 0.488488014513 G140A-W155A 0.478246392516184 S52A-L103A 0.478190922824162 T23A-Y63A 0.472165130279116 V51A-L103A 0.468123564980608 F34A-M50A 0.466626358743897 V55A-K240A 0.466274378890263 H62A-D236A 0.454792810857718 L132A-P162A 0.452943285049349 T105A-A130A 0.449235709589753 V135A-S159A 0.446390407979712 P102A-L126A 0.444582428421461 S219A-I225A 0.440227157076647 S30A-A53A 0.439730821744257 T199A-D236A 0.419577190492012 A59A-T100A 0.417888422596453 V32A-A53A 0.414704336717568 F20A-Y63A 0.409571780470639 S21A-Y63A 0.405165769534922 M133A-T160A 0.401457667570057 W155A-M211A 0.400301882225749 T199A-L238A 0.399851042486381 V101A-A131A 0.397992939451903 S21A-H62A 0.392932576684838 V51A-L104A 0.391269829930768 S219A-T224A 0.389138666909897 T23A-G60A 0.388941910432546 M27A-G60A 0.385698111263704 L195A-W200A 0.376462774561166 T26A-A241A 0.376393922238663 A25A-A241A 0.373975879757282 Y61A-D96A 0.372930125740558 Y94A-I134A 0.369267651253887 T100A-T105A 0.363684259317219 L196A-A239A 0.363218062429718 L99A-A131A 0.3574069841475 Y61A-V237A 0.356291399304826 Y63A-R93A 0.355607300042728 A206A-L228A 0.35362914374707 G140A-Y203A 0.353242159047073 Y203A-Y232A 0.350471904466424 R93A-L98A 0.340499249784465 E141A-F157A 0.337849309567945 Y63A-D96A 0.336690852849429 V55A-L99A 0.333094508878977 M133A-P162A 0.33299485294657 K125A-P162A 0.328041704908832 Y138A-W155A 0.327256645802074 M27A-K240A 0.32674848940088 L98A-V135A 0.322125709468136 V164A-Y203A 0.320812549796843 V24A-Y92A 0.318731297973131 W155A-P204A 0.316560042520094 M50A-V101A 0.314769020126996 M133A-L158A 0.307228170798651 Y94A-P102A 0.303952505028692 Y207A-P218A 0.303865880570631 P222A-Q229A 0.301201621816402 V101A-W200A 0.300587356272364 T105A-P162A 0.295848397568508 M133A-I161A 0.282330948793697 L98A-A130A 0.281407250722885 Y94A-P204A 0.280570087457265 L136A-G153A 0.275742288226056 P102A-G127A 0.273690724356355 W97A-T199A 0.270721910024148 V56A-K240A 0.265917968550498 F20A-F64A 0.262476880554432 E141A-N220A 0.262362683272794 T105A-W165A 0.260604768960628 M27A-V237A 0.257818303633949 S21A-F64A 0.257728879325838 R93A-Y232A 0.256408148318738 Y203A-V237A 0.254747548860481 V55A-L104A 0.254148259720216 S159A-Y207A 0.25275416679592 W155A-P162A 0.24747842437765 F202A-Y232A 0.246436762630738 T100A-T199A 0.246107498236692 L104A-G242A 0.245878502386872 G127A-F163A 0.245406573375763 A59A-K240A 0.244523949488071 F33A-A53A 0.244491971904861 T221A-Q229A 0.243716664023251 L99A-T105A 0.242049391855062 A59A-D236A 0.241962301658196 W200A-T233A 0.239558165795501 G140A-L154A 0.238079336190776 A198A-Y243A 0.235745757006677 F31A-Y243A 0.231060591533899 P139A-P204A 0.230441579382125 V24A-D96A 0.229473341036369 V101A-I166A 0.229439417612737 V24A-D236A 0.228423338869238 A198A-K240A 0.227540702511707 F22A-Y61A 0.227120600965599 E141A-P204A 0.225636840081229 S21A-S30A 0.224679338376154 G156A-P204A 0.223462994863224 F34A-S52A 0.222883251306442 F20A-G231A 0.222242812988959 H62A-Y232A 0.221013379682996 V32A-G60A 0.219820100362433 G156A-A206A 0.219375420407014 A131A-Y138A 0.216277396566491 Y232A-K240A 0.215436036011005 P102A-Y243A 0.214829721311216 Y94A-Q229A 0.213145330599684 T160A-W200A 0.213129453823821 L136A-G156A 0.212459159589589 S30A-A239A 0.212443817469615 F157A-Y203A 0.210871305510969 Y203A-A235A 0.209117828378831 R93A-K240A 0.208578609757001 F31A-A53A 0.206760731578834 L103A-M133A 0.202961757748562 P139A-W155A 0.202586078930087 L104A-M133A 0.201702041108391 T100A-W200A 0.200501968501907 E141A-W155A 0.200445054912723 R152A-Y207A 0.199621175664978 R93A-V101A 0.198396298582226 G156A-G201A 0.195649407640095 T105A-I134A 0.195637699177973 Y94A-D236A 0.194654195940183 D96A-A131A 0.193333001062958 T105A-W200A 0.191784404709853 H62A-V237A 0.191770603414774 T26A-A239A 0.191561613758575 A25A-G60A 0.191166070344625 W155A-Y207A 0.190878426183798 R93A-A235A 0.190829474025483 L136A-E141A 0.190368749416554 A59A-A239A 0.189977132237022 Y94A-A131A 0.189939729790854 W97A-Y138A 0.188999677509764 S30A-Y61A 0.188874468664198 T224A-T233A 0.187542774049281 W200A-I234A 0.187422272178115 M19A-L238A 0.187189188627006 Y138A-Y203A 0.18600451896043 A25A-T233A 0.18564428341978 M133A-Y207A 0.185351627265759 P102A-K125A 0.185110028700585 V35A-M50A 0.183945542430832 G60A-D236A 0.183835222254905 V56A-V237A 0.183795963551203 L158A-P204A 0.181940933572445 L104A-A239A 0.181611062701819 T221A-L228A 0.181545719739637 Y92A-E141A 0.180930137076361 G137A-L158A 0.180442318717052 F31A-M50A 0.179176853635532 V101A-F163A 0.179143744220669 G127A-W165A 0.177917708323229 S52A-L238A 0.177693763665965 S159A-Y203A 0.177472731863985 F202A-Q229A 0.177085959206192 W97A-Y203A 0.176632989147786 K125A-F163A 0.175197168905362 V95A-D236A 0.174503354543667 E141A-Y207A 0.174029153217177 W97A-T105A 0.173245982906979 T28A-T233A 0.173049511297825 T26A-D236A 0.172976010004031 G127A-I166A 0.172195099149993 V24A-G60A 0.171444022881931 T23A-G231A 0.17117312008972 T160A-T199A 0.170500690172235 Y138A-P162A 0.16982124062964 S219A-A227A 0.168230884900147 D96A-T233A 0.166061649176569 G127A-I134A 0.165812937385967 A130A-I166A 0.165659741943358 A206A-V226A 0.164768952482691 M19A-G60A 0.164179788054387 A198A-G244A 0.164117533506332 V32A-Y61A 0.163394583616062 M19A-V230A 0.16303150642146 A131A-I166A 0.162438248745712 T105A-T199A 0.160764221156386 V95A-A130A 0.160038233496792 L196A-G201A 0.159473913778764 V51A-V56A 0.158016552198255 Y61A-Y94A 0.156912631297701 T26A-H62A 0.156799083189394 S21A-A29A 0.155607910315801 D96A-Y232A 0.155355660448218 T105A-L196A 0.154740707944782 G60A-L99A 0.153897226889175 I134A-W200A 0.15379451507319 V55A-D236A 0.153735063922806 I58A-L99A 0.153642781027211 L54A-P102A 0.151516067543821 P102A-S159A 0.150358880831267 L196A-P204A 0.149799912020303 Y207A-Q229A 0.149696039352923 L103A-G127A 0.148822870854681 H62A-K240A 0.148423026684268 A239A-G244A 0.148252421756239 H62A-T233A 0.148087950840753 W97A-T233A 0.14805140554324 V24A-V56A 0.147686304665328 T199A-P204A 0.147645996353752 S219A-V226A 0.146999243645098 E141A-I205A 0.146698746235843 I134A-I161A 0.145438945412805 G201A-G231A 0.14462135469465 L98A-W200A 0.144491426110666 A206A-S219A 0.143584709155512 V35A-A241A 0.143388901247179 T233A-G242A 0.142410063989377 L54A-W97A 0.140805296713189 M27A-Y232A 0.140017286693989 P218A-L228A 0.139524687957206 S159A-V164A 0.139505061483349 L104A-K125A 0.136795561620254 W165A-W200A 0.13616428551435 M208A-Y232A 0.135970606008854 A25A-I58A 0.134673958627489 A198A-D236A 0.134281444547624 T100A-T233A 0.13400487642898 T26A-F64A 0.133064856061662 A198A-V237A 0.13270350526227 L98A-Y203A 0.132700637754918 L158A-M208A 0.132626045098214 R93A-G137A 0.13174625268265 V164A-A198A 0.131411083924966 L195A-Y203A 0.12992463213518 Y207A-A227A 0.129755539261685 T26A-G244A 0.129682516952009 L158A-Y207A 0.129441605439721 M133A-G201A 0.12930160206475 A53A-A239A 0.128939232522649 Y94A-A130A 0.128672573023177 A130A-Y138A 0.128359610932054 I58A-V101A 0.128253905717953 Y92A-Q229A 0.128020635451844 F34A-G242A 0.127661533472297 P102A-K240A 0.127165401410607 G201A-M208A 0.126702131359408 P162A-Y203A 0.126667823417379 T100A-G137A 0.12621630946017 T28A-H62A 0.125918146072691 M19A-A227A 0.125062768702025 G156A-P162A 0.124737410507366 I205A-A227A 0.12463011227787 R152A-A206A 0.124544752502732 L154A-P204A 0.124095066345435 G140A-P204A 0.12391182588059 K125A-I166A 0.123756439413817 W97A-A131A 0.123710841718644 P102A-G244A 0.123588770328877 V95A-Y232A 0.123492509101155 V56A-P102A 0.123077231249642 T100A-A235A 0.1217188840931 S52A-A239A 0.121392255803118 Y203A-M211A 0.121302272880214 W200A-Y232A 0.12051127571331 N18A-T26A 0.119334250926849 L136A-Y207A 0.118559391096716 L98A-L126A 0.118097287915101 A198A-Y232A 0.118004558124359 G140A-M211A 0.117934275388795 L103A-L132A 0.117713212039578 L54A-Y243A 0.117568388764799 S21A-V230A 0.117339867070266 S30A-I58A 0.117144135327716 L126A-V164A 0.117071771435002 A130A-A239A 0.116971170523632 L126A-L196A 0.116761233358177 T199A-G244A 0.116236501654382 I134A-S159A 0.116212952445063 L104A-Y243A 0.115550768691152 S159A-I166A 0.114920257019901 L98A-S159A 0.114857220386995 S21A-Q229A 0.114620686508156 F31A-S52A 0.114491136511287 G201A-I209A 0.113826234590534 W97A-L132A 0.113201711004985 V35A-L54A 0.113053360904017 A29A-A59A 0.112942743071876 S52A-V237A 0.112334312212843 A235A-G244A 0.112152262400197 V55A-G127A 0.112029049746948 M19A-Y61A 0.111837681369751 A130A-Y203A 0.111686923710381 F202A-T233A 0.111669745009262 V95A-G137A 0.110979129351707 S159A-P204A 0.110547861398423 L197A-K240A 0.110125431974481 L158A-I166A 0.109829631278638 R93A-G231A 0.109460366566992 L197A-A235A 0.10943368600322 V56A-L238A 0.109269098159809 Y92A-I134A 0.108248429893915 V95A-P139A 0.107987128544912 L104A-L238A 0.107868132959209 G140A-I209A 0.107722924800557 A130A-G137A 0.107344964082616 A25A-V55A 0.107214076738219 V101A-A241A 0.107082591255858 V101A-G137A 0.107072204832377 V101A-A235A 0.106493405379161 A59A-G242A 0.106480620711941 Y203A-A239A 0.10631305502036 G223A-G231A 0.106235788427372 A198A-G231A 0.106147803992285 G153A-A206A 0.106057977750117 S21A-Y61A 0.105571326911554 V101A-T233A 0.10543172330687 A29A-K240A 0.105258548931518 S21A-A241A 0.105258458248996 A29A-H62A 0.104508229184543 L104A-L195A 0.104100792051285 Y63A-A241A 0.103223211839285 V95A-L136A 0.103187278128745 W97A-L129A 0.102912165359383 F20A-D236A 0.102618457676884 V55A-T233A 0.102382964506043 F20A-V226A 0.1014761425656 F22A-V230A 0.101367640086324 G201A-I234A 0.101284180168132 L99A-Y138A 0.101237642514028 Y94A-L132A 0.101079828138673 P222A-G231A 0.100878783940675 T199A-A206A 0.100178705590777 V95A-L103A 0.100130546433668 A29A-S52A 0.10009350154167 H62A-A235A 0.0992540651992257 V135A-W155A 0.0984650676754537 Y207A-I225A 0.0983217757336674 V95A-M133A 0.0982033838027805 A130A-G201A 0.098097157027436 G60A-T100A 0.0978846021647305 G140A-A206A 0.0972313583917553 V101A-K125A 0.0970522971765142 F33A-A59A 0.0969528167131415 V24A-L238A 0.0966647041601409 L197A-P204A 0.0963867916854555 A198A-A206A 0.0958912859264003 T160A-A206A 0.0958680849589904 V101A-T199A 0.0953927687915623 E141A-S159A 0.0947573926647411 V101A-G201A 0.0943025617991697 I58A-L238A 0.0938017842234385 W97A-G137A 0.0937787131619849 V56A-L98A 0.0932479774552968 P218A-A227A 0.093127822330759 L154A-I205A 0.0928314218422586 A53A-Y243A 0.0927457352109549 W200A-G231A 0.0924607124731365 L158A-I205A 0.0916207014149976 L197A-Y243A 0.0912886989451409 V51A-L99A 0.0908552227255246 T26A-V230A 0.0908531544792335 H62A-T100A 0.0906097507810595 T28A-V237A 0.0905322729599334 G137A-A206A 0.0904314098577661 G140A-T160A 0.089972393299001 M133A-L154A 0.0899479998614789 A59A-R93A 0.089871870165136 I161A-G201A 0.0897732533634714 P102A-W200A 0.0896514930726791 A29A-G242A 0.0895299132740437 Y203A-A227A 0.0892896264182754 W97A-Y232A 0.0892622715825553 L129A-L196A 0.0888972177864389 T23A-I58A 0.08881501318905 Y138A-L154A 0.088630837202595 L136A-V164A 0.088602014681826 G153A-P204A 0.0885749613326037 G60A-T233A 0.0879337353857843 L103A-F163A 0.0879197207737672 L99A-L126A 0.087686605942332 I161A-L197A 0.0874758341759718 L103A-A241A 0.0874562952835189 T23A-G242A 0.0872546545765749 T100A-G244A 0.0870074609414618 F57A-L238A 0.086951717466399 F163A-L195A 0.0867783103478026 T105A-G244A 0.0865196207005758 Y63A-Y92A 0.0863962197134533 G137A-P162A 0.0863632013446987 W97A-A235A 0.0863438807738226 L228A-D236A 0.0863305158095167 M133A-G140A 0.0861868121422384 L54A-L98A 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