[Wed Aug 24 17:15:19 2016] >Input file: TM3F7YATD.pdb >TM segments: C38-52_C56-69 MAIDEN score = -5.9714 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V48C-I60C 0.906504069812076 L41C-L66C 0.723914567686341 S44C-L66C 0.711962269951577 L40C-L66C 0.702403809685048 V48C-L59C 0.691934083466135 A47C-L59C 0.662367511236973 G43C-S69C 0.63043502305894 I60C-A65C 0.586277023485162 Y45C-A65C 0.523931393766207 L59C-W68C 0.502941979919242 L49C-I60C 0.479392554778478 R52C-L59C 0.441974789851831 L59C-R64C 0.43461914533386 A50C-A65C 0.375723310879713 A57C-A65C 0.356111344106558 G43C-E51C 0.334070346649985 L46C-E51C 0.30961008747753 S44C-S69C 0.293687596859851 G43C-L59C 0.289189931089657 Y45C-L66C 0.277988482271225 A47C-A65C 0.254535248207867 R52C-A65C 0.245596457979004 L49C-P63C 0.227640216293815 S44C-W68C 0.208020077794773 V39C-Y62C 0.202334703853429 R52C-Q58C 0.189257687867535 V48C-L66C 0.182125352350257 Q58C-P63C 0.177636537295231 I38C-G43C 0.165115078613041 G56C-A65C 0.163076286667652 G43C-L66C 0.154406906405597 E51C-I60C 0.148194124905857 V39C-S44C 0.144070173438744 L41C-S69C 0.131934914931056 E51C-A57C 0.125535675534131 G43C-W67C 0.122828316280835 L40C-W68C 0.120435343942139 S44C-R64C 0.118608275697167 Q58C-L66C 0.117979120413619 A42C-P63C 0.116894689818197 G43C-T61C 0.111063278528875 V48C-A65C 0.110445114944467 A57C-R64C 0.110358227934715 S44C-R52C 0.106809669910685 A50C-G56C 0.10645996293869 A50C-T61C 0.100669840513688 L40C-P63C 0.0995646027033614 L49C-R64C 0.0859860108883572 A47C-P63C 0.0849572767222559 L40C-A50C 0.0705226722399042 L40C-W67C 0.0698859610167029 E51C-Y62C 0.0667586492381371 A57C-Y62C 0.0661641926257399 A47C-I60C 0.065805648487224 L41C-T61C 0.0621590675625763 A50C-Y62C 0.062091001433656 L40C-R64C 0.0620138894704634 L46C-A57C 0.0615641921826366 L41C-R64C 0.0574437510610797 A42C-T61C 0.0527381057109513 A47C-G56C 0.0511596787752913 L46C-Q58C 0.0504049768066883 L59C-A65C 0.0492132141709072 L59C-L66C 0.0473603239908978 V48C-Y62C 0.0458536012072326 S44C-Q58C 0.0432598379031663 I38C-A47C 0.0399533485913555 A47C-W67C 0.0376241195603777 I60C-W67C 0.033729849026179 S44C-L59C 0.0323952438002646 L40C-Y62C 0.032044303336022 L49C-A57C 0.0303486972654632 I38C-P63C 0.0290315112820005 A42C-A50C 0.0276408631578051 V48C-T61C 0.0257389102489949 E51C-R64C 0.0225499866616694 E51C-S69C 0.0205633551825963 L46C-R64C 0.0204059063361601 V39C-A65C 0.0190216955924702 Y62C-W68C 0.0188625180052145 A50C-R64C 0.0185845507255102 L41C-V48C 0.0183443725240426 L41C-W68C 0.0183416854597755 V48C-G56C 0.0157484799577956 A47C-Q58C 0.0146842029688758 Q58C-S69C 0.0139900017049124 V39C-L49C 0.0128811227214127 Y45C-R52C 0.0106960841746435 S44C-I60C 0.0106516870649926 A47C-R52C 0.00995501511262287 L49C-L66C 0.00729560772022708 I38C-W67C 0.00558391997891228 G43C-I60C 0.000914012596134217 G43C-R64C 0.000740242115631951 R64C-S69C -0.00326872258772015 A50C-L59C -0.00344961499460728 L46C-P63C -0.0053992717100293 L41C-A65C -0.00550192848046516 A57C-W68C -0.006025568919726 G43C-P63C -0.00655758822468244 G56C-T61C -0.00784626244409825 V39C-A47C -0.0088202021021857 E51C-W68C -0.0114900836911449 E51C-L66C -0.0115323237514575 I38C-Y62C -0.013022377987105 R52C-Y62C -0.0134355846130951 V39C-V48C -0.014309149228326 A42C-W67C -0.01508235691727 I38C-S69C -0.01559072555043 Q58C-W67C -0.0166808435183288 P63C-W68C -0.0293813971345251 L40C-A65C -0.0301102349900129 Q58C-W68C -0.0312677327562585 Y45C-R64C -0.0314342160698802 T61C-S69C -0.031898961474289 Y45C-W68C -0.03242039174149 I38C-A65C -0.0374866202217916 L49C-T61C -0.0377823752687299 L46C-A65C -0.040067892017728 L40C-Y45C -0.0401815010996858 L49C-L59C -0.0404379052743939 V39C-S69C -0.042628430273429 R52C-R64C -0.0426593947561315 Y45C-Q58C -0.0428238192027388 V39C-P63C -0.0431617006921825 V48C-Q58C -0.0434348615848163 L41C-A47C -0.0449650527443257 Y45C-A57C -0.0454246673545695 A42C-Y62C -0.0457724195617888 A42C-L66C -0.0497959422319569 A50C-Q58C -0.0498109589397703 R52C-P63C -0.0499104036900428 L49C-G56C -0.0510910226012804 R52C-L66C -0.0549249936319343 Q58C-A65C -0.055551294124534 S44C-W67C -0.056230588940176 A50C-S69C -0.0583165511728545 S44C-P63C -0.0584122678522956 A42C-W68C -0.0592876948660856 L49C-S69C -0.0596521479005638 Y45C-Y62C -0.0631057777504287 L41C-L59C -0.0633290457413587 A42C-I60C -0.0665583515457211 V48C-A57C -0.0724182716464572 S44C-E51C -0.0736904915834573 L41C-I60C -0.0759742780835619 V48C-P63C -0.0774316808535529 R52C-W68C -0.0776202994124464 Q58C-R64C -0.0815788994052258 R52C-A57C -0.0826140998477545 I38C-L66C -0.0827291695994421 A42C-E51C -0.085053159411792 Y45C-T61C -0.0851345008045479 I60C-S69C -0.0876547293923071 L49C-Y62C -0.0881857666659687 V39C-W67C -0.0901926266632425 A50C-L66C -0.0902408847933529 L46C-S69C -0.0907701845048043 S44C-T61C -0.0920362894960678 A47C-Y62C -0.097155433919081 G43C-R52C -0.0995694507524885 A42C-A65C -0.0998092770458534 L40C-L59C -0.102075442813032 V48C-R64C -0.102105216153256 A47C-W68C -0.102602036970808 L40C-T61C -0.103426539167798 A42C-L49C -0.106281099642167 Y45C-S69C -0.106347770315226 I38C-L46C -0.108921791204692 A42C-R64C -0.112167717275375 L46C-Y62C -0.114642635308984 V39C-W68C -0.118868253412963 Y45C-L59C -0.120090575619868 A50C-W68C -0.122546376200147 L46C-W67C -0.122666951215374 S44C-A57C -0.125143267906857 V48C-W67C -0.129427733942036 E51C-T61C -0.130299443801774 L41C-A50C -0.131275973152062 Y45C-W67C -0.132352502468073 Y62C-W67C -0.132860528849917 Y45C-I60C -0.141572904597091 A47C-A57C -0.142403897605024 E51C-L59C -0.143246807552771 L41C-L49C -0.14529621663938 L40C-S69C -0.145308002105901 E51C-A65C -0.146944561792664 A47C-T61C -0.150007020600299 I38C-W68C -0.158534692429659 P63C-S69C -0.159347720877426 L40C-L49C -0.161075466916308 A42C-L59C -0.162010591513722 V39C-L66C -0.165500764648835 L49C-Q58C -0.16615424179192 A42C-S69C -0.168741703793584 G43C-A50C -0.172888401552305 L41C-Y62C -0.175417339452527 S44C-Y62C -0.177245168230059 A42C-V48C -0.186103917420365 L49C-A65C -0.187349259014749 L46C-L59C -0.18814614372252 T61C-W68C -0.190107835156425 L46C-L66C -0.190123305384696 Y45C-P63C -0.19343043766944 G43C-L49C -0.193528590530738 A42C-A47C -0.196437144772364 Y45C-E51C -0.198968036290159 G43C-V48C -0.199698671657756 V39C-L46C -0.200680908685344 L59C-S69C -0.201228271467918 R52C-T61C -0.205017700877189 L49C-W68C -0.205314142878578 L40C-V48C -0.207726381576622 S44C-A50C -0.209159388510587 T61C-W67C -0.211913668130199 G43C-Y62C -0.215892247582852 Y62C-S69C -0.21658086890346 A47C-L66C -0.222393837437506 A50C-A57C -0.234791897902056 I38C-S44C -0.235666357249485 E51C-G56C -0.237806532546047 I38C-Y45C -0.239057993645564 A47C-R64C -0.242352549367838 L46C-W68C -0.248807538606076 L46C-R52C -0.258576556802977 R52C-I60C -0.260641418240667 G43C-W68C -0.261047780423391 T61C-L66C -0.264925348823914 I60C-W68C -0.265648000644719 G43C-A65C -0.278021842202691 L40C-L46C -0.284231211278971 V48C-S69C -0.285049939214018 L46C-T61C -0.290956349414889 V39C-Y45C -0.298832612681902 E51C-Q58C -0.305436264398534 L40C-A47C -0.310619486249583 I60C-L66C -0.313275536106797 Y45C-A50C -0.319539237392954 L59C-W67C -0.329142643572883 V48C-W68C -0.336477994148646 S44C-A65C -0.338262282579685 L41C-W67C -0.339079907502232 S44C-L49C -0.353929715808023 L41C-L46C -0.364382098262987 E51C-P63C -0.381429606485725 A50C-I60C -0.402195146936461 L46C-I60C -0.412469768761401 A47C-S69C -0.488329046877245 L41C-P63C -0.54795081985328