[Wed Aug 24 19:48:35 2016] >Input file: TM3JAECGD.pdb >TM segments: A215-233_A243-262_A272-292_A316-337_C891-910_C919-937_C951-970_C991-1009_B551-571_B581-600_B611-630_B654-675_E1568-1586_E1594-1613_E1626-1645_E1667-1685_D1230-1249_D1256-1275_D1289-1308_D1328-1347 MAIDEN score = -120.7665 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- BBeads pair Empirical energy ----------- ---------------- L892C-I897C 1.07693274760801 L554B-I559B 1.07647840127799 L1230D-I1235D 1.07634730528636 L1568E-I1573E 1.07626783258203 L216A-I221A 1.07535344349496 L929C-Q934C 0.933420317407759 L1605E-Q1610E 0.931563064214572 L253A-Q258A 0.931517130849819 L1267D-Q1272D 0.931345160459891 L591B-Q596B 0.92975962744632 W670B-L675B 0.779043945480036 W332A-L337A 0.778837052304707 V1604E-L1635E 0.739493562591792 V590B-L621B 0.739161409949757 V252A-L283A 0.739094216704781 V928C-L959C 0.739073397861445 V1266D-L1297D 0.738799193048922 F1248D-T1328D 0.694630923637559 D276A-V281A 0.69037891079337 D952C-V957C 0.689789332302313 D1628E-V1633E 0.689031824930035 D614B-V619B 0.688992583717662 D1290D-V1295D 0.688738972268053 V928C-F963C 0.678020078000216 V590B-F625B 0.677795423038054 V1266D-F1301D 0.677732867796509 V252A-F287A 0.677728151340714 V1604E-F1639E 0.676678653710292 M895C-Q934C 0.673159750686159 M1571E-Q1610E 0.67282371263326 M219A-Q258A 0.672690546538827 M557B-Q596B 0.672178111476528 M1233D-Q1272D 0.671942960376676 C282A-F287A 0.661944124787717 C958C-F963C 0.661924553918961 C620B-F625B 0.661886742566669 C1634E-F1639E 0.661879444512497 C1296D-F1301D 0.661869162202288 T1603E-V1638E 0.661168329380783 T589B-V624B 0.661030194282024 T927C-V962C 0.660967964324192 T1265D-V1300D 0.66075477725967 T251A-V286A 0.660748251667886 W616B-L621B 0.65502027705139 W1630E-L1635E 0.653942899894504 W1292D-L1297D 0.653206459942021 W954C-L959C 0.652983570721242 W278A-L283A 0.652278933074472 I564B-T589B 0.623316586560541 I226A-T251A 0.623294836872372 I1240D-T1265D 0.623131592750996 I902C-T927C 0.62308139986748 I1578E-T1603E 0.623079487751171 M1607E-C1634E 0.596489374116222 M255A-C282A 0.596055035508345 M1269D-C1296D 0.5959711751281 M931C-C958C 0.595952914500322 M593B-C620B 0.595825287400786 S568B-L585B 0.534661328727792 S906C-L923C 0.534346525471245 S1244D-L1261D 0.534322337883603 S230A-L247A 0.534285373235856 S1582E-L1599E 0.534175636533304 R920C-L966C 0.529595713687645 R1596E-L1642E 0.529383965720818 R1258D-L1304D 0.529279041918549 R582B-L628B 0.529196219779428 R244A-L290A 0.529103161071273 M1607E-L1635E 0.525047928913173 M593B-L621B 0.524685538817745 M255A-L283A 0.524526705371064 M931C-L959C 0.524416851380302 M1269D-L1297D 0.524079931533836 S561B-I566B 0.5009412486767 S899C-I904C 0.500882832700558 S223A-I228A 0.5007520312221 S1237D-I1242D 0.500667625787723 S1575E-I1580E 0.500454376208727 L1336D-F1341D 0.474530218345027 L322A-F327A 0.47448415140993 L660B-F665B 0.474002154346556 L998C-F1003C 0.473352357057587 L1674E-F1679E 0.472519212158408 D1628E-C1634E 0.47133392806923 D952C-C958C 0.470788548359662 D276A-C282A 0.470713688622808 D614B-C620B 0.470653119585442 D1290D-C1296D 0.47053790183725 F320A-L325A 0.457583431607942 F1334D-L1339D 0.45738864029733 F996C-L1001C 0.457302912972978 F658B-L663B 0.45720797119931 F1672E-L1677E 0.456987655478265 S230A-V286A 0.447870522744963 S906C-V962C 0.447858337607415 S1244D-V1300D 0.447857208686552 S1582E-V1638E 0.447826458790656 S568B-V624B 0.447820079383176 W1583E-F1672E 0.444988512927759 W569B-F658B 0.44480171016234 W907C-F996C 0.444710853997641 W231A-F320A 0.444455248725241 W1245D-F1334D 0.444134171253856 S1273D-M1293D 0.43695802972629 S259A-M279A 0.436895134168558 S1611E-M1631E 0.436894964747067 S935C-M955C 0.436812766205141 S597B-M617B 0.436767118803714 R317A-L322A 0.420127165069113 R1331D-L1336D 0.420017484780389 R655B-L660B 0.419988135671658 R993C-L998C 0.419975961818697 R1669E-L1674E 0.419819390918882 F1586E-R1669E 0.417100402428938 F1248D-R1331D 0.416696162131879 F910C-R993C 0.416645440988509 L325A-F330A 0.393582053781765 L1677E-F1682E 0.393364575186782 L663B-F668B 0.392801235651222 L1339D-F1344D 0.392761574451024 L1001C-F1006C 0.392749978619731 K611B-C620B 0.389938986428556 K273A-C282A 0.38993401352803 S1640E-Y1645E 0.384275166932845 S964C-Y969C 0.383962658078793 L283A-S288A 0.38383206664886 S1302D-Y1307D 0.383717948984662 L621B-S626B 0.383617964162724 L1297D-S1302D 0.383533255678973 L1635E-S1640E 0.383516556751975 L959C-S964C 0.383414019274158 V1579E-V1638E 0.383148935040651 V1241D-V1300D 0.383138832784739 V227A-V286A 0.382957720083118 V903C-V962C 0.382858099847446 E1306D-T1328D 0.382714347467238 V565B-V624B 0.38271216900924 V1584E-R1596E 0.376726643688331 V908C-R920C 0.376687661139226 V1246D-R1258D 0.376588160016921 V232A-R244A 0.376515600456345 V570B-R582B 0.376357040759988 I555B-P560B 0.3753363971605 I217A-P222A 0.375198970048649 I1231D-P1236D 0.374981783062201 I893C-P898C 0.374922159714234 I1569E-P1574E 0.374640785861992 F1676E-I1681E 0.371208370655424 F324A-I329A 0.371017912880365 F1000C-I1005C 0.370671452227622 F1338D-I1343D 0.370384592669204 F662B-I667B 0.370167578213097 Q894C-K611B 0.368230301295619 K273A-Q556B 0.364721567559328 P898C-W954C 0.363728925499285 P560B-W616B 0.363706675771472 P1574E-W1630E 0.36369810997649 P222A-W278A 0.363655068998326 P1236D-W1292D 0.363529809938036 T926C-C958C 0.363074127486582 T588B-C620B 0.363029227239974 T1264D-C1296D 0.363001732002194 T250A-C282A 0.362991982912249 T1602E-C1634E 0.36287025514624 M1631E-L1636E 0.361610092140333 M279A-L284A 0.361528694164133 M1293D-L1298D 0.361457925460573 M617B-L622B 0.361379483211987 M955C-L960C 0.361347843849272 Y1307D-V1329D 0.357009545012743 Y969C-V991C 0.357004821349137 Y1645E-V1667E 0.357004170687645 I226A-M255A 0.354459509838585 I1240D-M1269D 0.354118530606461 I1578E-M1607E 0.35404833600369 I564B-M593B 0.353937454131168 I902C-M931C 0.353423761346622 S568B-A627B 0.346826714380754 S906C-A965C 0.34665946993996 S1244D-A1303D 0.346542678742085 S230A-A289A 0.346318620817079 S1582E-A1641E 0.346123260140853 V1337D-N1342D 0.343744597945354 V661B-N666B 0.343552080648607 V323A-N328A 0.343398254320276 V1675E-N1680E 0.343035310494423 V999C-N1004C 0.342873318314709 A965C-A995C 0.341288237472069 A627B-A657B 0.341172884697237 A1641E-A1671E 0.341028585354584 A1303D-A1333D 0.341014325719195 A289A-A319A 0.340828225337681 I925C-M931C 0.339340548374212 I326A-Y331A 0.339104950881025 I1678E-Y1683E 0.339079180157754 I1263D-M1269D 0.338997142257151 I664B-Y669B 0.338981963450053 I1340D-Y1345D 0.338935599925328 I1002C-Y1007C 0.338862586868183 I1601E-M1607E 0.33861539606116 I249A-M255A 0.338185776853104 I587B-M593B 0.337906982677955 S598B-K611B 0.333457914626035 S260A-K273A 0.333457415521171 M557B-I613B 0.333049375384138 M895C-I951C 0.332847709761901 M219A-I275A 0.332579644660551 M1233D-I1289D 0.332305045624969 M1571E-I1627E 0.331923938863199 T1264D-T1603E 0.331781184035742 T927C-T588B 0.330191875819784 T1602E-T251A 0.329139600311002 T926C-T1265D 0.327958834297807 V1638E-L1643E 0.320046609765027 V286A-L291A 0.319775145319004 V624B-L629B 0.319712482088483 V962C-L967C 0.319699274373324 V1300D-L1305D 0.319270441588957 G924C-A970C 0.31886612454294 G1262D-A1308D 0.318733289717426 T250A-T589B 0.318043887037165 G248A-F287A 0.31765013547745 G924C-F963C 0.317475375689774 G1262D-F1301D 0.316640405038346 S626B-A657B 0.316490585393383 S1302D-A1333D 0.316489734405382 S288A-A319A 0.31640994149388 S1640E-A1671E 0.316379176587554 S964C-A995C 0.31626618856233 G586B-F625B 0.315713040191095 G1600E-F1639E 0.314244850297836 N666B-K674B 0.311395255422947 N328A-K336A 0.311128781730858 Y669B-K674B 0.305050075583282 Y331A-K336A 0.304914301976709 S571B-R582B 0.303772508136367 S909C-R920C 0.303479313293677 S1247D-R1258D 0.303203012072889 S1585E-R1596E 0.303011049163525 S233A-R244A 0.302496850447887 V1597E-L1642E 0.301782884773086 V245A-L290A 0.301735350585288 V583B-L628B 0.301724146005974 V1259D-L1304D 0.301684451262922 V921C-L966C 0.301606480365923 L567B-L585B 0.299157095662463 L229A-L247A 0.299128175701346 L1243D-L1261D 0.299121734022552 L905C-L923C 0.299112554748162 L1581E-L1599E 0.299108359961474 E1306D-F1334D 0.296317653374509 E1644E-F1672E 0.296294271736921 L1636E-A1641E 0.29600320025217 E968C-F996C 0.296000031352024 L622B-A627B 0.295937936019985 E292A-F320A 0.295913688250628 L284A-A289A 0.295906952858265 L1298D-A1303D 0.295870823805912 L960C-A965C 0.29579210358771 E630B-F658B 0.295688427042842 Y1645E-R244A 0.295176118670873 T933C-P1236D 0.290729831327752 Y969C-R1258D 0.28983552407189 P898C-T595B 0.28967391747908 S262A-A274A 0.287016700711785 S935C-P1236D 0.286777194555397 T1271D-P1574E 0.286628035639495 S600B-A612B 0.286364713915124 T926C-T1268D 0.286154309807721 Y1307D-R1596E 0.285219160873581 T930C-T588B 0.283808699426998 T1264D-T1606E 0.2830669126371 T257A-P560B 0.28288418012041 T1609E-P222A 0.281727687593644 C1634E-I1681E 0.281430247159469 C282A-I329A 0.281308807747291 C958C-I1005C 0.281260795242869 G924C-L1261D 0.28115817562329 C1296D-I1343D 0.281115547423346 C620B-I667B 0.280926053781835 L923C-G586B 0.279779354867494 G1262D-L1599E 0.279176847028202 G1600E-L247A 0.276296515605281 P898C-S597B 0.275686538731021 M279A-Q556B 0.275599662917177 M1293D-Q1570E 0.275548643051193 Q894C-M617B 0.275542315668136 M955C-Q1232D 0.275518751248876 D1628E-M219A 0.275409636842459 P222A-S230A 0.273863071191302 P560B-S568B 0.273772786068154 P1236D-S1244D 0.273545134727746 P1574E-S1582E 0.273482805726145 P898C-S906C 0.273433737863783 V908C-R993C 0.272892959113729 V1246D-R1331D 0.272639541350436 V232A-R317A 0.272463137694833 V570B-R655B 0.272413573862138 V1584E-R1669E 0.27231989963854 P222A-Q258A 0.270745053402046 P560B-Q596B 0.270684693948562 P1236D-Q1272D 0.270546999328119 P1574E-Q1610E 0.270327096594388 P898C-Q934C 0.270190862424719 M1631E-Q218A 0.270038816221738 S1273D-P1574E 0.269343296265416 T1609E-C1634E 0.267371770567113 T933C-C958C 0.267264554063559 T257A-C282A 0.267239347015389 T1271D-C1296D 0.26719305106651 T595B-C620B 0.267172302140828 N1004C-I1009C 0.266386079870262 D276A-M557B 0.265837501810804 N1342D-I1347D 0.265042827207738 N666B-I671B 0.264918044751642 N328A-I333A 0.26457756910607 N1680E-I1685E 0.264422463063017 S223A-L229A 0.262160037111453 S1237D-L1243D 0.262149731557059 S1575E-L1581E 0.262089837312732 S899C-L905C 0.262027269089986 V245A-T250A 0.26197494611805 S561B-L567B 0.261889093913144 V583B-T588B 0.261474131051702 V1259D-T1264D 0.261434919020715 V1597E-T1602E 0.261420951865301 T1602E-T254A 0.261402255984813 G248A-L585B 0.261314019745178 V921C-T926C 0.261296711773701 G246A-T251A 0.261092281287448 G584B-T589B 0.261058521057366 D1290D-M1571E 0.260794078507728 Y896C-D952C 0.260655936308171 Y1234D-D1290D 0.260642993846935 Y1572E-D1628E 0.260637137831254 G1260D-T1265D 0.260572936074738 G922C-T927C 0.260570116525114 Y558B-D614B 0.260544942470323 Y220A-D276A 0.260544785113439 S259A-P560B 0.260483655311639 G1598E-T1603E 0.260355528460661 M895C-D614B 0.260343117191622 S1611E-P222A 0.259926935943978 F625B-E630B 0.259320880521773 F1301D-E1306D 0.259234020763161 F963C-E968C 0.259149412452127 F287A-E292A 0.25902040023678 F1639E-E1644E 0.258917538859356 V583B-M593B 0.258109402264475 V245A-M255A 0.257921787892787 V1597E-M1607E 0.25791869947026 D952C-M1233D 0.257724683046377 V921C-M931C 0.257692680347793 V1259D-M1269D 0.257442314378498 R1258D-E1306D 0.256741693201783 R920C-E968C 0.256735612024251 R582B-E630B 0.256577710020887 R1596E-E1644E 0.256514625728951 R244A-E292A 0.256511649013117 V272A-M557B 0.254314101423169 P222A-T250A 0.251795176214846 P1574E-T1602E 0.251609484284908 P560B-T588B 0.251594778050221 Q894C-G599B 0.251383835589792 P1236D-T1264D 0.25138364014792 P898C-T926C 0.251316633392826 C282A-E292A 0.251311641565874 C1296D-E1306D 0.251294678754499 C958C-E968C 0.25129220063286 C620B-E630B 0.251271403960509 C1634E-E1644E 0.251253136583292 G1275D-Q1570E 0.250506750276145 T250A-T592B 0.250085475554272 G937C-Q1232D 0.249903010467985 G261A-Q556B 0.24938427690303 G1613E-Q218A 0.248467081055767 T933C-Q1232D 0.247236155244113 T254A-T589B 0.247024133915359 T1609E-T250A 0.246838379204875 T257A-T594B 0.246722891104155 T254A-T588B 0.246604404998633 T254A-T595B 0.246306334924139 T1268D-T1603E 0.246293822338012 T1271D-T1608E 0.246237442355735 T1606E-T251A 0.24623069374598 T933C-T1270D 0.246216111732124 T1609E-T256A 0.246207867819442 T932C-T595B 0.24619893632118 T927C-T592B 0.246169742815913 G586B-L622B 0.246152439825272 T930C-T1265D 0.246013137478684 G1262D-L1298D 0.245937895545103 T1606E-T257A 0.245766836342228 G1600E-L1636E 0.245726647873955 G924C-L960C 0.245333067524188 G248A-L284A 0.245203829427157 Q894C-T595B 0.244892496877345 G924C-A965C 0.244673351736682 G248A-A289A 0.244640272455926 G586B-A627B 0.244387334220552 Q218A-T254A 0.244382123761078 Q1570E-T1606E 0.244353691715873 Q1232D-T1268D 0.244337585269058 Q894C-T930C 0.244335193205212 Q556B-T592B 0.244281445980128 G1262D-A1303D 0.244256454562528 G1600E-A1641E 0.244200919188717 T930C-T1271D 0.243731645745257 T1271D-Q1570E 0.243510429046796 T933C-T592B 0.243221344939221 T933C-T1264D 0.242967637714875 T1268D-T1609E 0.242717503542929 Q218A-S260A 0.242068912302084 G551B-Q556B 0.241991788554268 T926C-T595B 0.241991413298736 Q556B-S598B 0.241970433312618 Q894C-S936C 0.241969111033288 Q1232D-S1274D 0.241907477913744 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