[Wed Aug 24 19:51:05 2016] >Input file: TM3JAFCGD.pdb >TM segments: A212-235_A241-264_A269-295_A317-341_C896-919_C925-948_C953-979_C1000-1024_B554-577_B583-606_B612-637_B659-682_E1580-1603_E1609-1632_E1637-1663_E1685-1709_D1238-1261_D1267-1290_D1295-1321_D1343-1366 MAIDEN score = -183.4044 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- BBeads pair Empirical energy ----------- ---------------- L1242D-I1247D 1.05698267354463 L216A-I221A 1.05668778518231 L900C-I905C 1.05549819755491 L1584E-I1589E 1.05547559208033 L558B-I563B 1.0550639274322 I677B-V682B 1.01876872252317 I1703E-V1708E 1.01871520466474 I1361D-V1366D 1.01861876067241 P584B-A927C 1.01856970268692 I1019C-V1024C 1.01856353266588 I335A-V340A 1.01844905282692 A1269D-P926C 0.990205189324657 A1611E-P1268D 0.987673349055389 P1610E-A243A 0.925954385572625 A294A-W577B 0.881333847509194 A1662E-W235A 0.853047448528649 A636B-W919C 0.845647236242109 W1702E-L1707E 0.843199043460299 W334A-L339A 0.843146085486926 W1360D-L1365D 0.84314170099801 W1018C-L1023C 0.843030643485674 W676B-L681B 0.843005938157754 P242A-A585B 0.840345621308551 W1603E-A1320D 0.828333575735006 W1261D-A978C 0.816442214977248 D1302D-V1307D 0.787856085356822 D618B-V623B 0.787681354348445 D276A-V281A 0.787581756280808 D1644E-V1649E 0.787511249479191 D960C-V965C 0.786892615624399 L595B-Q600B 0.737349645152541 L1621E-Q1626E 0.737015117431614 L937C-Q942C 0.736425894706507 L1279D-Q1284D 0.736187237769371 L253A-Q258A 0.736037394177973 M219A-Q258A 0.675141813229213 M903C-Q942C 0.675032158441368 M1245D-Q1284D 0.674714833486846 M561B-Q600B 0.674425432695165 M1587E-Q1626E 0.674408964215874 M1623E-L1651E 0.618062357611999 M597B-L625B 0.618050301949045 M255A-L283A 0.617994891077116 M1281D-L1309D 0.617834510955419 M939C-L967C 0.617765785550758 C966C-F971C 0.60247020446795 C624B-F629B 0.602303082951904 C1308D-F1313D 0.602234894237565 C282A-F287A 0.601499472059368 C1650E-F1655E 0.601196076455892 G1616E-F1655E 0.58534235409377 G248A-F287A 0.58471690440127 G1274D-F1313D 0.584512394817151 G932C-F971C 0.584477775471758 G590B-F629B 0.584169099351003 S914C-L931C 0.581447393930025 S230A-L247A 0.581439044425581 S1256D-L1273D 0.58136100949821 S1598E-L1615E 0.581358982622718 S572B-L589B 0.581321377122149 M1281D-C1308D 0.573002636735598 M939C-C966C 0.572891874884718 M597B-C624B 0.572835536368893 M255A-C282A 0.572763498468425 M1623E-C1650E 0.57257872262425 S1259D-R1270D 0.566255928317534 S233A-R244A 0.565920440171491 S575B-R586B 0.565916378587315 S917C-R928C 0.565912190073887 S1601E-R1612E 0.565588263785351 Y1240D-Y955C 0.547618407589266 Y1582E-Y1297D 0.533363255832953 P1268D-L1273D 0.52932714177449 P1610E-L1615E 0.528687202292523 P926C-L931C 0.528621573232186 P584B-L589B 0.528591110072522 P242A-L247A 0.528524196277528 Y1639E-Y214A 0.526502257234232 T251A-V286A 0.525911986356358 T1277D-V1312D 0.525683417349827 T1619E-V1654E 0.525621755411867 T593B-V628B 0.525454295907506 T935C-V970C 0.525416084386205 V594B-L625B 0.518790602204877 V936C-L967C 0.518123927829315 V252A-L283A 0.518053194161903 V1278D-L1309D 0.517715712647126 V1620E-L1651E 0.517157618283234 V1258D-A978C 0.516302303633618 V1613E-A243A 0.514994132398571 V1600E-A1320D 0.51113671152904 V587B-A927C 0.509890393011346 A1611E-V1271D 0.505853943281984 S1601E-L1615E 0.502958186686437 S233A-L247A 0.502929641116282 S917C-L931C 0.502905233168552 S575B-L589B 0.502895525525704 S1259D-L1273D 0.502670249040465 A1269D-V929C 0.500005664898803 A636B-V916C 0.499372710460065 K957C-W962C 0.492860710769813 K1641E-W1646E 0.492787335992392 K273A-W278A 0.492762381766085 K615B-W620B 0.492712970403922 K1299D-W1304D 0.492537307715592 V245A-A585B 0.49217131392553 A1662E-V232A 0.49129404296043 R586B-L632B 0.482192462411093 R928C-L974C 0.482143167011242 R1612E-L1658E 0.482112967767718 R1270D-L1316D 0.482099348436472 R244A-L290A 0.481828396820254 D1644E-C1650E 0.472767139438789 D618B-C624B 0.47245957517084 D1302D-C1308D 0.472251706667747 D960C-C966C 0.471956714926515 D276A-C282A 0.471818460895706 A294A-V574B 0.46482138468655 S572B-V628B 0.463775891013645 S1598E-V1654E 0.463728487809371 S230A-V286A 0.463709783559444 S914C-V970C 0.463649676201575 S1256D-V1312D 0.463598196869166 V227A-C282A 0.454393457844398 V1595E-C1650E 0.45437055363591 V569B-C624B 0.454183704693707 V911C-C966C 0.453980931666932 V1253D-C1308D 0.453976915996753 Y613B-Y898C 0.453541414065152 S914C-A973C 0.444458664160711 S1256D-A1315D 0.444300242016301 S230A-A289A 0.444249649436976 S1598E-A1657E 0.444228487939125 S572B-A631B 0.444162988995145 W1646E-L1651E 0.43315662482723 L324A-F329A 0.432924758890254 L1008C-F1013C 0.432798490851395 L1692E-F1697E 0.432524873115534 L666B-F671B 0.432480676588767 W278A-L283A 0.432310506874288 L1350D-F1355D 0.43209303712797 W620B-L625B 0.432011282015065 W1304D-L1309D 0.430887314324163 W962C-L967C 0.430740721269341 M1238D-S954C 0.426716521464523 Y271A-Y556B 0.425772526810507 S1656E-Y1661E 0.420745811514131 S1314D-Y1319D 0.420745075773314 S630B-Y635B 0.420735061604931 S288A-Y293A 0.420721904058933 S972C-Y977C 0.420718747917012 M1245D-I1301D 0.419012741170868 M561B-I617B 0.419003775063811 M219A-I275A 0.419002762145386 M1587E-I1643E 0.418993439929253 M903C-I959C 0.418982130681002 L1597E-L1615E 0.414155482684406 L229A-L247A 0.414150031926689 L913C-L931C 0.414115794508788 L571B-L589B 0.414064651796007 L1255D-L1273D 0.413351568657358 M1580E-S1296D 0.411490094420651 E976C-T1000C 0.410841837471096 S1627E-M1647E 0.409996959287877 S601B-M621B 0.409694993970838 S943C-M963C 0.409647772801689 S1285D-M1305D 0.409542056650798 S259A-M279A 0.409452395545835 V245A-L290A 0.409076878727945 V929C-L974C 0.408988722840552 V1613E-L1658E 0.408912870462612 V587B-L632B 0.40891060626775 V1271D-L1316D 0.408866570887302 A1609E-A243A 0.407090914153687 A583B-A927C 0.403085820311199 A1611E-A1267D 0.399108394339951 S612B-M896C 0.398970059987916 Y1241D-S954C 0.397641349076913 A1269D-A925C 0.39757262644549 S907C-I912C 0.397498964769865 S223A-I228A 0.397271508244486 S1249D-I1254D 0.397038759746241 S565B-I570B 0.396801668295963 S1591E-I1596E 0.396673598434843 R1687E-L1692E 0.394557547717221 R319A-L324A 0.394061986848771 R1345D-L1350D 0.393840585622722 R661B-L666B 0.393767836079456 R1003C-L1008C 0.393397582966672 F1690E-L1695E 0.390517093551233 F322A-L327A 0.390401916477103 F1006C-L1011C 0.390313203261229 F1348D-L1353D 0.389913750973665 F664B-L669B 0.388610742415894 Y1583E-S1296D 0.385567682214437 W334A-V340A 0.381958798586188 W1360D-V1366D 0.381930898535758 W1018C-V1024C 0.381916289234072 W1702E-V1708E 0.38189618915552 W676B-V682B 0.381879767789968 S1638E-Y215A 0.381389874418354 A636B-A927C 0.378385203958938 A294A-A585B 0.376471481169784 Q1244D-K957C 0.375462915991894 Q1586E-K1299D 0.368146883419517 S260A-P564B 0.366035247862103 S1628E-P222A 0.363688966503053 L931C-V936C 0.363256945526122 L1615E-V1620E 0.363093994324809 L1273D-V1278D 0.363083117250164 L247A-V252A 0.362957090456376 L589B-V594B 0.362882212869278 K1641E-Q218A 0.360243456321808 M212A-W334A 0.358414768750744 M1580E-W1702E 0.358370175602055 M554B-W676B 0.35832088094564 M896C-W1018C 0.357941612209769 M1238D-W1360D 0.357918757550758 A1611E-A1320D 0.356077196642185 S1638E-M212A 0.35565125068809 F1602E-R1687E 0.354383187653794 F576B-R661B 0.353908274252292 F918C-R1003C 0.353841312214257 F1260D-R1345D 0.353841312214257 F234A-R319A 0.35383759213281 A1269D-A978C 0.352172307435437 S575B-A585B 0.352140118586398 S233A-A243A 0.352067617256887 S1601E-A1611E 0.352029296256822 S917C-A927C 0.351951664824547 S1259D-A1269D 0.351867124006511 L967C-S972C 0.351555651571204 L283A-S288A 0.351498919750846 A241A-A585B 0.351298393218217 L1309D-S1314D 0.351159747406682 L1651E-S1656E 0.351059189291739 L625B-S630B 0.351029942239525 P1590E-S1286D 0.349888738516894 V1278D-V1312D 0.347891496667281 V1620E-V1654E 0.347890458763129 V252A-V286A 0.347880280658083 V594B-V628B 0.347879659241508 V936C-V970C 0.347869794489518 P1248D-S944C 0.346451439851471 K1299D-C1308D 0.346022834041206 K615B-C624B 0.345929620700961 K273A-C282A 0.345917586912128 K957C-C966C 0.345846281983879 K1641E-C1650E 0.345791443526388 M621B-L626B 0.344601733081362 M963C-L968C 0.34458104315588 M279A-L284A 0.344576992162886 M1305D-L1310D 0.344561394168198 M1647E-L1652E 0.344556617903418 K615B-Q902C 0.343079166241629 A1662E-A243A 0.34015451964639 V1258D-L975C 0.338662539248206 V587B-M597B 0.336433635386711 V1613E-M1623E 0.336433635386711 V1271D-M1281D 0.336433635386711 V245A-M255A 0.336433635386711 V272A-M561B 0.336433635386711 V929C-M939C 0.336433635386711 V614B-M903C 0.335878036465014 V970C-L975C 0.335642695473711 V628B-L633B 0.335283674870267 V286A-L291A 0.335155162667736 V1312D-L1317D 0.334976976996451 V1654E-L1659E 0.33474307205583 I1243D-P1248D 0.333646499953391 I1585E-P1590E 0.333593863745971 I559B-P564B 0.333586660548325 I217A-P222A 0.333259077010179 I901C-P906C 0.333017756011055 A264A-G603B 0.330155464513585 P564B-Q600B 0.326692172602586 P1248D-Q1284D 0.32657950414597 P906C-Q942C 0.326577571502611 P222A-Q258A 0.32655468181907 P1590E-Q1626E 0.326479853270729 S270A-M554B 0.325621553783146 S602B-P906C 0.32516324284223 S612B-Y899C 0.323470215108212 S1256D-A978C 0.322539991807409 T1624E-T251A 0.321193452605419 T598B-T935C 0.320814980352386 V1600E-L1317D 0.320629039299137 E976C-F1006C 0.320454554369075 E292A-F322A 0.320269024164824 E1660E-F1690E 0.320100170169671 E1318D-F1348D 0.319903069555887 E634B-F664B 0.319583410474137 K273A-Q560B 0.31840145298647 Y1359D-K1364D 0.318334534190689 Y1701E-K1706E 0.318301646004262 Y675B-K680B 0.318284095886667 Y333A-K338A 0.318181608574424 Y1017C-K1022C 0.318136226379899 S1598E-A1320D 0.318010344105794 T941C-C966C 0.317508313921179 T1625E-C1650E 0.317461988657486 T599B-C624B 0.317452394178674 T257A-C282A 0.31739436973079 T1283D-C1308D 0.31731282318613 M1580E-I1585E 0.31639971204142 M896C-I901C 0.316121705246875 T1619E-T1282D 0.315351486826542 M1238D-I1243D 0.314809719400106 G1274D-G930C 0.314504966389554 G588B-G932C 0.314436005806833 M212A-I217A 0.314144010619614 M554B-I559B 0.313825860819982 G1616E-G1272D 0.313650868768506 V1640E-M219A 0.312003101616138 G590B-A636B 0.311254820930244 G1616E-A1662E 0.311167116342747 G1274D-A1320D 0.311130820739423 G932C-A978C 0.311114706691174 G248A-A294A 0.311041486088907 I570B-S575B 0.311026851052727 I1254D-S1259D 0.311017127045622 I228A-S233A 0.3109221616045 I1596E-S1601E 0.310340154080954 I912C-S917C 0.309815574704126 T1277D-T940C 0.309435921141013 G1287D-G945C 0.308933167450133 T256A-T593B 0.308875544283508 M1587E-V1298D 0.308566847009579 G1629E-G1287D 0.308185275339028 Y293A-R319A 0.306587901983066 Y635B-R661B 0.30649555742606 Y1319D-R1345D 0.306412404652697 Y977C-R1003C 0.306308162392941 Y1661E-R1687E 0.306286991837007 G603B-G945C 0.306272238310542 A1632E-G261A 0.305075888562286 S1591E-A1648E 0.303236509576397 S565B-A622B 0.303178012511149 S223A-A280A 0.303055851860598 A1662E-S230A 0.303018928184287 S907C-A964C 0.30291556526698 S1249D-A1306D 0.30286003520192 A636B-S914C 0.301573134077752 S270A-Y557B 0.300722996002763 G1614E-G248A 0.299500083075738 T592B-C624B 0.298658353724766 T250A-C282A 0.298581921109459 T1276D-C1308D 0.298532267869374 T934C-C966C 0.298399298762869 T1618E-C1650E 0.298311824740127 G1629E-G261A 0.297678772370507 A606B-G945C 0.297318998192431 I1012C-Y1017C 0.297241395389095 I328A-Y333A 0.297164100978529 I1354D-Y1359D 0.297106613698992 I1696E-Y1701E 0.297086926876378 I670B-Y675B 0.297049691438838 I275A-A280A 0.296007441151804 I959C-A964C 0.295995422375094 I617B-A622B 0.295993778802013 I1643E-A1648E 0.295978571702718 I1301D-A1306D 0.295960322023925 T596B-P906C 0.295853181102929 P1248D-T938C 0.29562186830386 P1590E-T1280D 0.295600596203361 P906C-T934C 0.295325897067249 P564B-T592B 0.295318291131127 P222A-T250A 0.295315754846965 P1590E-T1618E 0.295310881109122 P1248D-T1276D 0.295309281874508 M1245D-V956C 0.294303861750095 T254A-P564B 0.294044118263961 T1622E-P222A 0.293992127929958 G1629E-A1290D 0.292796573604448 L968C-A973C 0.29168249691428 L626B-A631B 0.291625358769608 L284A-A289A 0.291556740144061 L1310D-A1315D 0.291461866657928 L1652E-A1657E 0.291412991334 L1615E-G246A 0.290383496426433 G1287D-A948C 0.290353758874209 V1009C-N1014C 0.289653286826214 V1351D-N1356D 0.289369826138765 V1693E-N1698E 0.289259887515373 V667B-N672B 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