[Wed Aug 24 17:17:05 2016] >Input file: TM3JCFCGD.pdb >TM segments: A293-308_A326-341_C990-1006_C1025-1040_B642-657_B676-691_E1688-1704_E1723-1737_D1339-1355_D1374-1389 MAIDEN score = -89.9810 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- BBeads pair Empirical energy ----------- ---------------- M300A-F648B 0.736149058519371 F1346D-M998C 0.734436497553322 F997C-M649B 0.733276060193602 M1696E-F299A 0.720755573496368 M1347D-F1695E 0.71494847610779 L1339D-A994C 0.646069648582896 L990C-A645B 0.629530096259811 A1343D-L1688E 0.624752508459809 L1000C-M1030C 0.605582149010985 L1698E-M1728E 0.602911416149891 L1349D-M1379D 0.602706463216395 L302A-M332A 0.601990440018317 L651B-M681B 0.599897461710689 F304A-A655B 0.561938227889904 T1001C-F653B 0.560495255843623 F1351D-A1702E 0.5563559432483 A1353D-F1002C 0.553552653004501 F1700E-A306A 0.552208502882582 F1351D-L1698E 0.530469809395397 A1004C-F653B 0.528484948660174 T1001C-T652B 0.526735812015453 F1700E-L302A 0.524240147391732 L1349D-F1002C 0.511820761611351 T1350D-F1002C 0.511362227412829 F304A-L651B 0.508538141919559 F1700E-T303A 0.505977027071821 M1696E-I295A 0.505445377991307 M1347D-I1691E 0.503787059714162 F1351D-T1699E 0.500941972667257 L1000C-F653B 0.49559235328657 I993C-M649B 0.495333400572259 F304A-T652B 0.487664218194449 I996C-M1037C 0.481169862565296 V1384D-Y1389D 0.480536057742771 V686B-Y691B 0.480024074938023 V1035C-Y1040C 0.479856997791485 I298A-M339A 0.47962393190362 I1694E-M1735E 0.479573717776698 I1345D-M1386D 0.476131629012063 I647B-M688B 0.472727488507836 I1342D-M998C 0.4726023009192 M300A-I644B 0.460486687074276 I992C-M1037C 0.446461456158182 I643B-M688B 0.445454986041869 I1341D-M1386D 0.445252442454391 I294A-M339A 0.445083971096407 I1690E-M1735E 0.444629783937762 F1346D-F1002C 0.411027718860966 F304A-F648B 0.407029249170358 F997C-F653B 0.406248671250636 T303A-T652B 0.405550361447034 T1350D-T1001C 0.405391939933978 I993C-T646B 0.403552369509101 F1700E-F299A 0.397480438394105 F1351D-F1695E 0.397428452775087 I308A-A655B 0.3875814955778 T297A-I644B 0.382584050533193 I647B-A685B 0.376089264864212 A1004C-I657B 0.375635213188551 I1345D-A1383D 0.375293481341225 I1694E-A1732E 0.374777180891068 I298A-A336A 0.374716942744718 I996C-A1034C 0.37442270759657 I1342D-T995C 0.374170418805648 I1355D-A1702E 0.373055584364611 I1704E-A306A 0.372233379162297 F997C-P650B 0.371288573387863 I647B-I684B 0.370595005940455 I1345D-I1382D 0.370058330996829 I298A-I335A 0.369364289510795 I1694E-I1731E 0.369244476262683 I996C-I1033C 0.369033802058487 T1699E-T303A 0.367399492166307 M300A-I305A 0.36584291053002 A1353D-I1006C 0.365665038556014 M649B-I654B 0.364075546498388 M998C-I1003C 0.359032726288511 M1696E-I1701E 0.358267680181349 M1347D-I1352D 0.356662482200118 T1693E-I295A 0.355150061669666 T1344D-I1691E 0.348075048649333 F1346D-P999C 0.344110881806677 T1350D-T1699E 0.335350220971488 P301A-F648B 0.331088891199805 P1697E-F299A 0.330878946744992 P1348D-F1695E 0.329203985783912 F648B-F653B 0.320956772264752 F997C-F1002C 0.320246354592241 F299A-F304A 0.319757107561789 T1001C-T303A 0.318760681938037 F1695E-F1700E 0.318716021120265 F1346D-F1351D 0.318708315329566 A1004C-G307A 0.317333884251331 T1001C-T1699E 0.315312815826712 G1005C-A1702E 0.312892682924113 I644B-M649B 0.311165950077299 T1350D-T303A 0.308911203181982 G1354D-A306A 0.303639240359631 I1342D-M1347D 0.302120787116788 I1691E-M1696E 0.299805160759995 A1343D-A1383D 0.299634159425744 A645B-A685B 0.299492297806807 A1692E-A1732E 0.299362531488651 A994C-A1034C 0.298067332860192 I993C-M998C 0.297665572044785 I295A-M300A 0.296224944227163 A296A-A336A 0.2961296533952 G307A-L678B 0.287341194057358 L1376D-G1005C 0.279379698647445 G1354D-T1699E 0.279125570020214 T1340D-P999C 0.277518208372795 G1703E-T303A 0.277139129538083 T646B-M688B 0.276774830256712 T297A-M339A 0.276008706319645 T1693E-M1735E 0.275528341795949 T995C-M1037C 0.274818917809651 T1344D-M1386D 0.274627648582152 G307A-T652B 0.273853271620143 L990C-T642B 0.272679024148678 P1697E-T293A 0.272001397367221 P1348D-T1689E 0.271711363435637 T991C-P650B 0.271489708905359 G1703E-A655B 0.270995937327869 P301A-T642B 0.269952036359213 G1703E-L329A 0.266857696567296 T1350D-G1005C 0.263097163375531 T1001C-G656B 0.26086436435048 G1354D-L1725E 0.258881205166204 T642B-P650B 0.255034608248139 L1027C-G656B 0.252519269742608 T1689E-P1697E 0.250684502835395 T1340D-P1348D 0.25035366474884 T293A-P301A 0.248950731295129 T991C-P999C 0.248773468859781 L1339D-T1689E 0.238537836078901 L1688E-T293A 0.236838487253592 T1340D-L990C 0.235941193421904 L1339D-T991C 0.230385198601848 A1353D-G656B 0.228676694868422 F1351D-A1004C 0.227571930049412 F1002C-A655B 0.227099507326835 T1340D-T1693E 0.225897070337929 T1689E-T297A 0.221374871329553 A306A-F653B 0.219721326795625 A1702E-F304A 0.219116994920189 T1699E-T652B 0.21838373143321 T1344D-T991C 0.217860477800409 I308A-V328A 0.217525669688388 A1353D-F1700E 0.21650729599153 I1704E-V1724E 0.216465287966655 I657B-V677B 0.215737240322378 I1355D-V1375D 0.215018926088235 I1006C-V1026C 0.209161935791064 T293A-T646B 0.206609542751093 F997C-M1030C 0.205861210084452 T991C-I647B 0.205732535074743 G307A-V677B 0.205291228091428 F299A-M332A 0.204905539695885 F1695E-M1728E 0.204754960968662 T1340D-I996C 0.204614808498771 P1348D-G1729E 0.204448932603736 F1346D-M1379D 0.203859241088459 I298A-T642B 0.20324437589328 P1697E-G333A 0.202706904652892 L990C-M688B 0.202415905037111 I1694E-T293A 0.201800617953481 F648B-M681B 0.201523792861465 T1340D-I1385D 0.20064140604066 T1689E-I1734E 0.200580488903616 T991C-I1036C 0.200541581640645 T293A-I338A 0.20021418249227 I1345D-T1689E 0.200184146034344 T642B-I687B 0.200044437165515 I305A-V327A 0.199424583833702 T652B-G682B 0.198984885075509 G1031C-P650B 0.198967528360744 G1380D-P999C 0.198673325319555 I1701E-V1723E 0.198319333461912 T303A-G333A 0.197805524088102 T1350D-G1380D 0.197571091350626 T1001C-G1031C 0.197558876414254 I1352D-V1374D 0.197034000103167 T1699E-G1729E 0.196891050983028 T995C-T642B 0.196401619790938 I1003C-V1025C 0.196340464646968 I654B-V676B 0.196085482829944 L1339D-M1037C 0.193768094512114 P301A-G682B 0.191753380110753 M1386D-L1688E 0.190067344626438 T1340D-L1688E 0.189474297442079 L990C-T646B 0.185452738784512 T991C-I996C 0.184914967735912 T293A-I298A 0.184844420569368 T1340D-I1345D 0.184304884303468 T1689E-I1694E 0.183847336047495 L1698E-V1727E 0.182267911551038 L302A-V331A 0.182123159175767 F1351D-F1002C 0.182087180959432 F1700E-F304A 0.181891787406683 L651B-V680B 0.181850911285169 F1351D-F1700E 0.18166598108061 L1349D-V1378D 0.18128465191423 F304A-F653B 0.180756002650945 I1006C-G656B 0.179923953608588 L1000C-V1029C 0.179325469629591 T642B-I647B 0.17841497644823 M1030C-G656B 0.177710824527738 G1354D-M1728E 0.177266902788631 G1703E-M332A 0.176491378594554 M998C-G1031C 0.175513299398733 M300A-G333A 0.175215537438373 M1696E-G1729E 0.174827908091864 M1347D-G1380D 0.174714151360251 V1375D-G1005C 0.174301781843099 L1339D-T995C 0.174116141178327 T642B-T652B 0.172838729689862 M649B-G682B 0.172592715037581 T1689E-T1699E 0.171842692760456 T1340D-T1350D 0.171834501317147 T991C-T1001C 0.171824753160164 T293A-T303A 0.171534691701332 I996C-I647B 0.16665491969979 T1350D-T1693E 0.165997806154744 M1379D-G1005C 0.165092136096416 T1699E-T297A 0.165082651765792 I298A-I643B 0.164918820211839 I298A-I647B 0.164056460440352 I1341D-I996C 0.163350511061281 I992C-I647B 0.163080655098052 T995C-T652B 0.162929795394033 I1345D-I996C 0.161832870126581 I1694E-I294A 0.159863181773003 I1694E-I298A 0.159307719790354 I1345D-I1690E 0.158922288483949 I1345D-I1694E 0.157387984587323 M649B-V680B 0.157330248024977 T1350D-T652B 0.156892783693994 M1696E-V1727E 0.155892431108713 M1347D-V1378D 0.15529909557165 M300A-V331A 0.15489176751147 T1344D-T1001C 0.153522351447741 M998C-V1029C 0.152836394004487 T303A-T646B 0.150912772762885 G1005C-I654B 0.150592677475396 V1026C-G656B 0.150356234450692 I1342D-I1690E 0.149178245240302 G307A-M681B 0.148977490117241 I1003C-G656B 0.146894693112232 G1703E-V328A 0.146684261525121 M998C-A645B 0.143360793472636 I1691E-I294A 0.141988004340764 A645B-G682B 0.140398489221558 A1692E-G1729E 0.140109791600889 A1343D-G1380D 0.140007529620368 A994C-G1031C 0.138673042280156 I1003C-I654B 0.138624903655677 A296A-G333A 0.137316796137052 G1354D-V1724E 0.136806477978843 I647B-G682B 0.135297831957936 V1029C-M1037C 0.133726032611583 I1345D-G1380D 0.133556069570854 V331A-M339A 0.13353131369097 A296A-M649B 0.13329131566771 V1727E-M1735E 0.133278484880279 V1378D-M1386D 0.133090952914455 V680B-M688B 0.132891562088557 I298A-G333A 0.13258205087567 I1694E-G1729E 0.132063008830245 I996C-G1031C 0.131550233600112 I993C-M688B 0.131339276912499 T1001C-T646B 0.13094955596436 G1354D-M1696E 0.129935818178839 G1703E-M300A 0.129248541763746 T1344D-T1699E 0.129071347809483 T297A-T652B 0.129056243566693 M1347D-A994C 0.129017112711765 T1350D-T995C 0.129005586237374 T1693E-T303A 0.128848101608783 G307A-M649B 0.128376039302256 M998C-G656B 0.128294114385923 I993C-I643B 0.127995005223381 I294A-I338A 0.127404764346914 I1690E-I1734E 0.12719525603739 T1693E-I1701E 0.12702184514091 T995C-I1003C 0.127014804262733 T297A-I305A 0.126996388139837 T1344D-I1352D 0.126974564613455 T646B-I654B 0.126969916323149 I643B-I687B 0.126875491713256 I1341D-I1385D 0.126752412755829 A1692E-M300A 0.126684796418038 I992C-I1036C 0.125977512416955 A1726E-I1734E 0.125685361247437 A1028C-I1036C 0.125613225609029 A330A-I338A 0.125577062298992 P1348D-A1732E 0.125520808775254 P1697E-A336A 0.125380238948937 A1377D-I1385D 0.125373406710783 A1343D-I1691E 0.124924074542893 A679B-I687B 0.124785219338905 A1034C-P650B 0.12440596481473 A1383D-P999C 0.123321055088018 I1352D-G1005C 0.122683592579351 I1341D-I993C 0.12217995167001 I294A-I644B 0.122039489286621 I1033C-V1039C 0.122002539770526 I335A-V341A 0.121980179490462 I1731E-V1737E 0.121968548445881 I1382D-V1388D 0.121913982663469 I684B-V690B 0.121694601123423 F1002C-F653B 0.121336912787443 P301A-A685B 0.121277380444032 A1343D-M1696E 0.121265343789923 I992C-I644B 0.121101612947049 M1347D-G1005C 0.120721813507493 A306A-P326A 0.120575896714115 F997C-G1005C 0.120361113191071 F299A-G307A 0.120324675233631 F1346D-G1354D 0.120293265040096 F1695E-G1703E 0.120286310308514 F648B-G656B 0.12027642889928 A1353D-A655B 0.119856306134682 L1000C-A1028C 0.119247798638529 L1349D-A1377D 0.118710636262782 L1698E-A1726E 0.118255459146304 L651B-A679B 0.118177118505524 L302A-A330A 0.118014015831781 T1001C-G307A 0.116645189678777 G307A-I654B 0.116060678349196 L1688E-A645B 0.114761547808937 L990C-L1688E 0.113384110666286 F304A-V328A 0.113198337079816 T995C-G1031C 0.112800471576354 T1344D-G1380D 0.112798498681053 T1693E-G1729E 0.112594316833517 T646B-G682B 0.112536981024135 T297A-G333A 0.11253517272159 G1005C-T1699E 0.112146193707385 F1700E-V1724E 0.112113744304277 T1344D-L1688E 0.112048444463397 M1030C-Y1040C 0.111837681369751 M1379D-Y1389D 0.111837681369751 M681B-Y691B 0.111837681369751 V676B-M681B 0.111469924431434 L1000C-M1037C 0.111368374953098 V1374D-M1379D 0.11124988349319 V327A-M332A 0.110856515726846 V1723E-M1728E 0.110698840229746 V1025C-M1030C 0.110627156019293 G1703E-I308A 0.110612209385033 L302A-M339A 0.110533872007862 I1355D-G1005C 0.110414884717072 I647B-V680B 0.110398287891917 F1351D-V1375D 0.110277658663708 L1698E-M1735E 0.110244772615307 P1348D-M1728E 0.110206922802187 G1354D-T303A 0.11012740911849 L651B-M688B 0.109993692815918 I1345D-V1378D 0.109980175257087 F653B-V677B 0.109859480523051 P1697E-M332A 0.109836203998734 L1349D-M1386D 0.109701593111125 I1694E-V1727E 0.109500960997462 I298A-V331A 0.10928100494084 M1379D-P999C 0.109129133277083 I1342D-I992C 0.108948349367912 F1002C-V1026C 0.108744766320826 A1028C-G656B 0.108508439419668 M1030C-P650B 0.108471782942876 P326A-G333A 0.108352444590172 P301A-M681B 0.108177019143699 A1692E-I295A 0.10816643018593 A296A-I647B 0.107988108782766 A994C-V1038C 0.106407375233801 A296A-V340A 0.106201773585478 A1692E-V1736E 0.106072021842811 A994C-A645B 0.106037691652909 A1343D-V1387D 0.106018357717602 A645B-V689B 0.105667101649201 G1354D-A1726E 0.10533565255055 I996C-V1029C 0.104734224645314 L1000C-V1035C 0.104184839328436 L302A-V328A 0.104156111069019 A1702E-A655B 0.103796345613969 T646B-F653B 0.103590425814662 L1698E-V1733E 0.10351952261788 T1693E-F1700E 0.103335433417186 L302A-V337A 0.103307327576053 L1349D-V1384D 0.102690733228963 T297A-F304A 0.10260335089661 L1698E-V1724E 0.102551109097067 T1344D-F1351D 0.102521348473557 L651B-V686B 0.102266247797913 I1352D-I1003C 0.102241799323908 L651B-V677B 0.102208663438033 F304A-G682B 0.102066697687562 I1006C-L1027C 0.101772145134584 T995C-F1002C 0.101653648646738 T995C-A645B 0.101440079736681 G1354D-G656B 0.101384237930596 A296A-T646B 0.101337097705606 T1699E-G307A 0.101137238207822 G1703E-T652B 0.101044549384494 G1354D-T1001C 0.101039055941905 G1005C-T652B 0.100882307710962 T1350D-G1703E 0.100713867194147 T1344D-A994C 0.100650179988399 I996C-A645B 0.100573699686183 T303A-G656B 0.100468225801283 G1703E-A330A 0.100129273518211 I1690E-I295A 0.0998894052181649 A1692E-T297A 0.0997083832349879 G1703E-P326A 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