[Wed Aug 24 17:14:25 2016] >Input file: TM3ORGATD.pdb >TM segments: A92-118_A141-158_A278-294_A320-345_A357-372_A492-511_D96-121_D138-155_D279-321_D323-345_D357-372_D493-515 MAIDEN score = -135.9324 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I338D-L514D 1.13418062918781 V145A-A365A 1.02661898827258 V145D-A365D 1.0096447866674 T152A-Y358A 0.933501458726191 C148D-G362D 0.931699813490706 C148A-G362A 0.925224852796948 T152D-Y358D 0.91270073539825 W280D-I505A 0.840025614114325 F111A-Y293A 0.786230014867284 I325D-S499D 0.763311863426944 I338D-N511D 0.754135427363868 L287D-I498A 0.745274385472886 I338A-N511A 0.742598630604971 I498D-L287A 0.73254918265762 L108D-V292D 0.732140331134695 L99A-S285A 0.730154316512121 I325A-S499A 0.727493761197029 L99D-S285D 0.726922524241038 F111D-Y293D 0.720316376233846 L108A-V292A 0.713534254565589 V145A-L366A 0.696731068613906 V145D-L366D 0.680452169961442 L99A-L284A 0.674609816559253 V104A-V292A 0.672819806756221 I338D-S513D 0.672516287395066 L108A-Y293A 0.672031309798797 V104D-V292D 0.666230979860137 V141D-L366D 0.665615211352768 L287D-V494A 0.663043841993856 L99D-L284D 0.662238196401316 L108D-Y293D 0.644352390729632 V141A-L366A 0.636766200709719 R317D-P495D 0.628393037328021 A335D-F510D 0.620215203113428 A335A-F510A 0.591227829791013 V494D-L287A 0.587181401729945 L149D-R357D 0.576100766681046 Q319D-P495D 0.573686179240269 R339A-N511A 0.571757491617497 Y323A-V496A 0.571585095150427 Y323D-V496D 0.570548978339823 I505D-W280A 0.564770700632131 L149A-R357A 0.558492718405405 R339D-N511D 0.554789437578767 V332A-F510A 0.554649037685969 L99A-K281A 0.543025580938517 A107A-Y293A 0.529476012726041 A107D-Y293D 0.526673424203285 A335A-N508A 0.510359800384849 L329D-A503D 0.505688481698713 A503A-N508A 0.504989923782045 T152A-V361A 0.504823245146413 L99D-K281D 0.488257964484925 T152D-V361D 0.481677960549225 V332D-F510D 0.477743178944737 L326A-S499A 0.476851444828701 L149D-V361D 0.47327133647144 A503D-N508D 0.470372115957041 F109A-D114A 0.467182979499663 F109D-D114D 0.467047087399942 A335D-N508D 0.4665000423509 V104A-S285A 0.465554326701732 V104D-S285D 0.461386240341817 L329A-A503A 0.459511570352528 V141A-A370A 0.458746778204809 L149A-V361A 0.456085086570851 L326D-S499D 0.45309640499841 G331D-I505D 0.451014291897131 G327D-I498D 0.435513953666056 M330A-A503A 0.43370991643942 T100A-L284A 0.428277501542839 V96A-K281A 0.42818086793225 T100D-L284D 0.426946277956084 A328D-S499D 0.422483282328893 G331A-I505A 0.420936690462272 Y358D-V363D 0.418026379763451 C148D-V361D 0.416973279501002 R342D-L514D 0.416155656130569 A324A-L502A 0.415493448327893 C148A-V361A 0.41529640555224 V283D-L501A 0.414678258955379 L501D-V283A 0.413680337556303 T105A-G289A 0.413191523133634 V363A-A368A 0.407051054729887 G507D-R512D 0.406371595229508 L95A-K281A 0.405308530531023 V96D-L284D 0.404701843257958 V494D-A290A 0.404584937297394 Y358A-V363A 0.399301849063701 M330D-A503D 0.398061419016887 P495D-E294A 0.396142923504097 G327A-I498A 0.395316332725248 V96A-L284A 0.394947455753075 E294D-P495A 0.392897364824643 V96D-K281D 0.391957211393713 A290D-V494A 0.387963790893671 V332D-A503D 0.38744091675736 V332A-A503A 0.386659344891586 V142A-L366A 0.385803041637273 A324D-L502D 0.381430067695843 A328A-S499A 0.379615205093955 W280D-V504A 0.379523454429021 V363D-A368D 0.378415725886033 V142D-L366D 0.378173148099457 T105D-G289D 0.376794699544693 A328A-A509A 0.375580282802777 L501D-W280A 0.372727850700031 R94A-L99A 0.372291728024493 F153A-Y358A 0.370418012627333 A328D-A509D 0.365849243364709 V141D-A370D 0.35943195653622 Y140D-Q372D 0.357424258174795 V315D-Y323D 0.356585428700864 G144A-Y358A 0.355996223151651 G144D-Y358D 0.355871906868706 A324D-P495D 0.352531255070256 C97A-T105A 0.346316643300716 L284D-L501A 0.343459596186408 A324D-V500D 0.341070921842825 F153D-Y358D 0.340684614773352 C97D-T105D 0.338736068711598 A324A-P495A 0.334320574869971 G144A-A365A 0.330331753144208 V104D-G289D 0.328295493456079 G144D-A365D 0.325402156671883 A324D-S499D 0.324518817374164 C148A-C155A 0.324151262927556 V504D-W280A 0.322311019354427 Y345A-V364A 0.322133609940017 E294D-T320A 0.320316430605125 Y345A-V361A 0.317899971577812 G331D-L502D 0.317862257168708 V104A-G289A 0.317826391425274 L501D-L284A 0.317687905316426 V113D-Y293D 0.31700176679208 S316D-V496D 0.315001443848027 L99D-S288D 0.314775787029059 T320D-E294A 0.3137944352598 R339D-L514D 0.312862083911757 C148D-C155D 0.312621913521231 G331A-L502A 0.308569737419362 Y345D-V364D 0.305170595788776 M330D-N511D 0.301194366591394 A107A-V292A 0.300793846692644 W280D-L501A 0.30073059620766 M330A-N511A 0.296617995280122 V113A-Y293A 0.294405045636154 Y345D-V361D 0.294201530189446 L108A-G289A 0.294175467697325 S143A-G362A 0.292525037513846 S143D-G362D 0.290060668872025 L99A-S288A 0.286440529862664 V141A-S369A 0.284738637897509 V142A-Y358A 0.284685011482061 L95A-G282A 0.281777274886746 G331D-S513D 0.281628322803989 V142D-Y358D 0.279812562498849 I338D-R512D 0.279351051170964 L108D-G289D 0.276569847042305 V141D-S369D 0.274780726332721 Y323A-H492A 0.266751331932803 D114A-Y293A 0.265031571840765 A106D-G289D 0.263009579959829 V141A-A365A 0.260572011680832 F153A-R357A 0.260159445228438 R339D-N508D 0.257483252473654 R339A-N508A 0.256785859848979 Y293D-P495A 0.256563415310187 A106A-G289A 0.255507939187855 F153D-R357D 0.25542818239598 L322A-S499A 0.254798077354815 D114D-Y293D 0.254709369633729 D314D-V496D 0.24502195126842 S316D-P495D 0.239947387767623 G327D-L501D 0.238507549926924 P495D-Y293A 0.238028832314936 A112A-Y293A 0.235079653408667 L326A-P495A 0.233309649194099 Y323A-I498A 0.232709391146494 R357A-G362A 0.232696917250134 G103D-L287D 0.231800575980934 A112D-Y293D 0.231228435919135 G327A-L501A 0.231172333816744 Y323A-P495A 0.23076017758337 V157A-Y358A 0.229223148525377 Q319D-E294A 0.228681438754567 P495A-L502A 0.22778141412005 S499D-S285A 0.22754472573511 A146A-F359A 0.227249211591404 A107D-A290D 0.22673653626352 Y323D-I498D 0.224079316718424 A107A-A290A 0.223482153731317 R357D-G362D 0.22230121986897 S285D-S499A 0.221783300725269 V117D-C148D 0.22155239753001 P495D-L502D 0.220469264140646 A146D-F359D 0.216781291136884 V117A-C148A 0.21604090259966 C155A-G362A 0.215374167943017 G103A-L287A 0.213583393876509 V145D-V361D 0.21298949177697 A324A-S499A 0.210680036426242 L326D-V500D 0.210074965937098 G144A-V363A 0.20924998142598 C155D-G362D 0.209087097685105 V332A-V504A 0.207718710424398 G144D-V363D 0.207609435967852 A107D-V292D 0.207272729947857 L326D-P495D 0.204179971107279 L101D-S288D 0.202882767936835 G334D-A509D 0.201726167895136 F279D-V504A 0.201472522950135 L326A-V500A 0.201380043555291 L102A-S285A 0.197449697044191 M330D-L497D 0.1971331954746 L502A-N508A 0.19712002013412 A335D-R342D 0.196973951764638 A335D-R512D 0.196843985451538 C340D-Y515D 0.196708283566843 A286D-E294D 0.196534175144526 L329D-N508D 0.19635088498275 S285D-P495A 0.196085426915002 G327D-N508D 0.195969924218352 S316D-A324D 0.195403922535341 V504D-F279A 0.191471768405066 L149D-G362D 0.191302565344991 M330A-L497A 0.190811434554659 V104A-A290A 0.18715228374387 L329A-N508A 0.186817674759379 L102D-S285D 0.186513008010147 A286A-E294A 0.185977924360037 P495D-S285A 0.185530793927128 A328A-A335A 0.184603797860845 G144D-L366D 0.184407425412895 G144A-L366A 0.184215566171349 G327A-N508A 0.183929690331812 Y323D-P495D 0.183471462113102 W154D-R357D 0.182524386134847 W154A-R357A 0.182479332663194 V341D-S513D 0.18170314162181 L101A-K281A 0.178658145260369 G334D-L501D 0.177807069080659 L321D-S499D 0.177768658204085 G334A-L501A 0.177762640105876 A335A-I505A 0.177439799368886 A324A-I498A 0.176262128353637 V104D-E294D 0.175604418023927 D314D-P495D 0.175543458460491 L101D-G282D 0.174980090536478 L333D-S513D 0.174122714420255 L149A-G362A 0.173530797923225 G334A-A509A 0.173146825438082 V104A-E294A 0.172967189389366 L101D-K281D 0.172936296298773 S285A-Y293A 0.172488589885611 V142A-V361A 0.172354327029137 V142D-V361D 0.172231622700039 L321A-S499A 0.172204992821346 I505D-V283A 0.171744449757187 V104D-A290D 0.170972028968269 F153D-G362D 0.170359254380595 S285D-Y293D 0.170254601235628 L101A-G282A 0.169706832608286 T320D-L493D 0.169245343520823 A335D-I505D 0.169245113134258 S151A-A365A 0.168735849551542 V157A-R357A 0.168412628725957 V283D-A503A 0.167647544110767 V104A-I291A 0.167379288259628 C97D-G282D 0.167261683497313 T320D-A290A 0.166838638538344 T100A-W280A 0.166496991096252 A324D-G334D 0.165926309015251 F153A-G362A 0.165884875313797 A324A-G334A 0.165097144992923 F98A-G282A 0.164665247561151 H492A-S499A 0.164433225783568 C97A-G282A 0.163596557856267 N508D-F279A 0.162769263195799 A156A-G362A 0.1625375668603 C97D-W280D 0.161191147037731 F279D-N508A 0.161068942209944 L99D-V283D 0.160795029543316 G282D-G289D 0.159997915678087 L284D-I498A 0.159051240190634 C97D-L502A 0.15903256445268 V332D-V504D 0.158864492067568 L502D-N508D 0.158860312732201 A509D-L92A 0.158474387611236 G507D-Y515D 0.157729750235342 A503D-V283A 0.157635046620661 F109A-S288A 0.157389851610103 G282A-G289A 0.157002065781592 T100D-W280D 0.154438186398044 F109D-S288D 0.15382340278566 C97A-W280A 0.153542037391103 I338D-N508D 0.153196721793543 V283D-I505A 0.152866374329271 Y345D-Y515D 0.151465149596059 V141D-A365D 0.151284194655211 G144D-A370D 0.151021302184763 T318D-I325D 0.149792903656546 A324D-I498D 0.149105700408097 S151A-V361A 0.148000803535067 A503D-R512D 0.147448248266771 A286D-H492A 0.147207351855865 N508D-L93A 0.147088941936556 G144A-A370A 0.146200645587076 I498D-L284A 0.145320518226545 R357A-A365A 0.144925713742098 C97D-I505A 0.144419942932045 R357D-A365D 0.143584483287612 Y140D-A365D 0.143348461611508 I338A-N508A 0.143185244385536 A324A-H492A 0.142430574076883 M330D-S513D 0.141908509199463 L333A-G507A 0.141885093930908 F98D-G282D 0.141457939667284 V496D-A290A 0.141073896743685 S151D-V361D 0.140747988043874 P495D-S288A 0.140649117198739 S151D-A365D 0.139179526761746 L336A-N511A 0.139055205087131 S343D-S513D 0.138676408252246 G144A-V361A 0.138218868269735 F98D-A106D 0.137845176055015 L336D-N511D 0.136508658244054 I344D-L514D 0.136143979852158 Y293D-H492A 0.135352542583747 G103D-L284D 0.134718921085384 L502D-C97A 0.134592964046298 S151D-V364D 0.134148283933972 Y345D-L514D 0.133129561174039 V104D-V494A 0.132967498492239 K281D-I498A 0.132779751920315 Y358D-F367D 0.132492568425119 M330A-V496A 0.132218777008584 F98A-A106A 0.130964167599228 V494D-S285A 0.130929940875167 G334D-R342D 0.130669767699663 I505D-C97A 0.130404303199699 L287D-L321A 0.130264169705939 L99A-L108A 0.129850970430848 D314D-V494D 0.129726834042029 A290D-T320A 0.129459237627318 L321D-L287A 0.129418744678636 G103A-A286A 0.129352826362995 R317D-A324D 0.129309581236599 L502D-L99A 0.129152680387142 L326A-V506A 0.129057297769159 G144D-V361D 0.128677203897118 I505D-T100A 0.128628177196352 C148A-S369A 0.12850731397657 S151A-V364A 0.128307655250929 G103A-L284A 0.128076235640922 L326D-V506D 0.127920677748407 V506D-R512D 0.127685015566767 Y358A-F367A 0.127623467384494 T100D-I505A 0.127228564489824 A335A-R342A 0.126974384888499 A146D-R357D 0.12662950799269 C148D-S369D 0.126426193891524 L99D-L502A 0.125498332216512 I498D-K281A 0.124909025060809 L115D-L295D 0.124691363898658 A290D-V496A 0.124259628018382 Q319D-S499D 0.124135203250161 V283D-S499A 0.124088032775715 V283D-V506A 0.123431937009308 M330D-V496D 0.123314511574947 S288D-P495A 0.122795555982627 P495D-A503D 0.122782050268233 V504D-A278A 0.122067031609141 R342D-S513D 0.121695303161643 A324D-I291A 0.121533391857949 I138D-A368D 0.121130475281577 L147A-L360A 0.120720786853488 T320A-L493A 0.120498497146473 L95A-W280A 0.120469210414276 P495A-A503A 0.120127241099739 L99A-V283A 0.119921203746724 A146A-R357A 0.119743564117825 A286D-L501A 0.119413338438217 L99D-L108D 0.118998781702158 S499D-V283A 0.118812613891794 L93A-K281A 0.118692212733404 A328A-V506A 0.118655590802066 V104D-I291D 0.11823143124725 A328D-V506D 0.117432076038663 V332D-S513D 0.117331246438712 G334A-R342A 0.117278303882933 L147D-L360D 0.116884990750981 L287D-I505A 0.116004376233237 L101A-V292A 0.115860822455594 V145A-V361A 0.115649299316672 G334D-V500D 0.115592519849544 G103A-E294A 0.115360591918728 L99D-I498A 0.115051363077761 G103D-A286D 0.114942361013171 G334A-V504A 0.114840846505227 S288D-L497A 0.114728651664771 S316D-L497D 0.114657137275857 L497D-S288A 0.114611947017279 A290D-H492A 0.11444422567087 L501D-A286A 0.114164700828038 G103D-E294D 0.114048163268515 L101A-L287A 0.11404568801243 L139D-S369D 0.113551774978714 S285D-V494A 0.113475620508749 G282D-V504A 0.113280123733486 G334D-V504D 0.113227936596944 A328D-L502D 0.112946877584212 V504D-G282A 0.112835373570765 A112D-G289D 0.112179548372831 Y140D-F367D 0.111251389572448 S285A-V292A 0.111114186644663 A328D-L93A 0.110722773252308 L139D-A368D 0.110234328499318 G119D-Y140D 0.110226726173065 F337D-N508D 0.1101538613735 A324D-V332D 0.109964881755923 S288D-L501A 0.109577486067328 L336D-S513D 0.109525475332375 C97A-L287A 0.109524153214201 A112A-G289A 0.109499866250173 L333D-G507D 0.109395525832788 I138D-L371D 0.109278515747311 L501D-S288A 0.108589019775366 T320A-V500A 0.108526546831201 L287D-L295D 0.108277918108926 A324D-S288A 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