[Wed Aug 24 18:59:19 2016] >Input file: TM3SOKCGD.pdb >TM segments: A3-28 MAIDEN score = -4.3924 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- BBeads pair Empirical energy ----------- ---------------- E5A-V10A 0.645541037254425 I21A-D26A 0.52208251459556 I12A-A17A 0.301604553709682 L6A-A11A 0.295766670641204 L3A-V9A 0.199573671707477 I4A-V9A 0.169605259834444 I4A-V10A 0.150619539228178 L3A-I8A 0.150386461238762 E5A-A11A 0.124509424019202 L6A-I15A 0.111533182593295 I13A-I21A 0.102818524389259 V9A-G14A 0.10195066625738 L16A-I21A 0.0961697649855284 A17A-P22A 0.0947653647753786 L3A-I13A 0.0938017842234385 A11A-A18A 0.0937989409635271 I15A-A20A 0.0923498915263874 I13A-A18A 0.0911572175707036 L3A-I12A 0.0906887914152072 F19A-D26A 0.0698209676540134 L6A-G14A 0.0614799576576801 I15A-P22A 0.0552833293529547 A18A-N25A 0.0548686880863811 A17A-N25A 0.0497978549665337 L3A-A11A 0.0438117860939919 I12A-A20A 0.0415418870494866 A11A-A20A 0.0409734473293542 I8A-I13A 0.0382183946642227 A11A-F19A 0.0350315984709004 I15A-A23A 0.0282564575440709 A18A-D26A 0.0244851425749215 M7A-A17A 0.0190042091239526 E5A-G14A 0.0167756399028374 M7A-I15A 0.00428551530716703 V10A-A20A 0.00328799403297708 V9A-A17A 0.0029237030409881 I12A-I21A -0.000916496556600421 I13A-A20A -0.00484365495969108 A20A-Y27A -0.00794468216822164 I8A-A17A -0.0178591649318293 M7A-I12A -0.0179516526372154 V10A-A18A -0.0203066391809763 V10A-I15A -0.0208660643367207 I12A-F19A -0.0226893616732085 F19A-Y27A -0.0283668066115785 A18A-Y24A -0.0324154586151617 A17A-D26A -0.033865647008958 G14A-A23A -0.0345301144808925 I4A-I13A -0.0354211505217634 V9A-A18A -0.0356816814673842 P22A-Y27A -0.0371539646574978 M7A-L16A -0.0384687594139157 M7A-I13A -0.0424921514836996 I4A-G14A -0.0438082861927247 V10A-L16A -0.0498276270235252 I15A-Y24A -0.0531858395455007 G14A-P22A -0.0536333315832729 A17A-Y27A -0.0559696325694912 V9A-I15A -0.0596840679343487 I8A-I15A -0.0660413767934003 I8A-G14A -0.0686813435309013 G14A-Y24A -0.0738148689777969 A20A-I28A -0.0738461014618244 F19A-N25A -0.0782787376014336 E5A-I13A -0.0798701376647744 I13A-A23A -0.0899220246835952 I21A-Y27A -0.0917859421395555 L16A-Y24A -0.0937136881480698 I12A-A18A -0.0949358467584922 A17A-Y24A -0.0994502732913862 I13A-F19A -0.101391157604295 F19A-I28A -0.102011630944026 G14A-A20A -0.111460225826468 I13A-P22A -0.114258789361877 V10A-F19A -0.116970162554607 L6A-I12A -0.117368713649586 M7A-G14A -0.133771924443623 I8A-L16A -0.136212327874686 L3A-V10A -0.163561596867648 A17A-A23A -0.164424184975138 A20A-N25A -0.180593642073495 L16A-N25A -0.181462584645509 F19A-Y24A -0.186453730737374 E5A-I12A -0.187716594836302 G14A-I21A -0.192985100633927 I21A-I28A -0.194785860475225 A20A-D26A -0.204637118650397 A18A-A23A -0.207133169084305 A11A-L16A -0.212676754654275 P22A-I28A -0.220082154643157 I4A-I12A -0.223626210345019 A11A-A17A -0.230639097961831 G14A-F19A -0.238977820595229 L16A-A23A -0.259322899337536 V9A-L16A -0.282755863205651 V10A-A17A -0.313974397790888 L6A-I13A -0.322122446809319 I4A-A11A -0.329041302651815 I15A-I21A -0.377483502170911 A23A-I28A -0.47683635967048 L16A-P22A -0.568033151579885