[Wed Aug 24 18:34:51 2016] >Input file: TM3VMRATD.pdb >TM segments: A42-64 MAIDEN score = -6.9862 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I50A-A55A 0.283561913222539 A55A-Y62A 0.180256354644399 I42A-I50A 0.15789367595961 L48A-I53A 0.143419424034937 K45A-I53A 0.135904169610125 K45A-I50A 0.130837281055632 I53A-G59A 0.107849504639818 L48A-L56A 0.105356714807299 L48A-I58A 0.0922757042613433 I54A-Y62A 0.0896980445483488 L47A-F57A 0.0812980865474371 G59A-L64A 0.0805725580118941 L48A-F57A 0.0803497672108431 A55A-I60A 0.0798736484130744 L51A-F57A 0.0785129548732053 I42A-L47A 0.0667565877713838 L47A-A55A 0.0634579970510947 I52A-F57A 0.0563827372230552 A55A-F63A 0.0540199982040259 I42A-L51A 0.053819122292559 L51A-G59A 0.0453207289803941 L56A-L64A 0.040137314797664 I53A-M61A 0.0328862409630815 L47A-I52A 0.0315341293532603 L44A-I53A 0.0308777403201352 T49A-I54A 0.0305683665859657 L43A-L51A 0.0215907015281109 T49A-G59A 0.011029187543758 I46A-A55A 0.00940614999977907 T49A-F57A -0.015060435523961 L48A-I54A -0.0218288355577059 L51A-I60A -0.0323601067865278 T49A-I58A -0.0425349021433484 I53A-I60A -0.0433607867201902 I46A-I52A -0.0501352605999461 L43A-L48A -0.0513702773451414 L48A-A55A -0.0614862679319907 L43A-I52A -0.0644441737758568 I53A-Y62A -0.067714340643463 I54A-F63A -0.0699115353977842 L43A-I50A -0.0742966944216541 F57A-L64A -0.0804239915527059 L47A-L56A -0.0949404172710473 L44A-L51A -0.0979524481914114 I50A-G59A -0.100453148250182 K45A-I54A -0.100562297538644 K45A-L51A -0.103399382391682 T49A-A55A -0.10603765173138 L44A-T49A -0.107480991157368 I42A-T49A -0.123150546749515 L44A-I52A -0.129511021129399 F57A-Y62A -0.134316885153088 I46A-L51A -0.140062193804054 K45A-A55A -0.149354163505531 I58A-F63A -0.150217489398195 I52A-I58A -0.164824683116835 L56A-F63A -0.173202920799617 L47A-I53A -0.174455931787373 I54A-M61A -0.180615685345352 I50A-L56A -0.192431382123006 A55A-M61A -0.204029430783467 I54A-G59A -0.214027251987915 I52A-G59A -0.214917947419203 L56A-Y62A -0.21962152546703 T49A-L56A -0.220613666317703 I46A-I54A -0.224787899655339 I52A-M61A -0.235121597624316 L43A-T49A -0.235978147392353 I52A-I60A -0.236088709899028 I46A-I53A -0.241066490171826 I50A-I58A -0.2502312389516 I53A-I58A -0.258936966891718 I54A-I60A -0.263790751858321 F57A-F63A -0.266444938776113 I50A-F57A -0.269403228218723 L56A-M61A -0.274722977127819 L51A-I58A -0.288018792031238 L44A-I50A -0.309107954956045 K45A-I52A -0.311178040266459 L47A-I54A -0.33432704667935 I42A-L48A -0.369082222614487 L51A-L56A -0.404257836841231 I58A-L64A -0.417957760898361