[Wed Aug 24 17:20:39 2016] >Input file: TM4NTXCGD.pdb >TM segments: A378-400 MAIDEN score = -2.3303 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- BBeads pair Empirical energy ----------- ---------------- Y379A-L384A 0.667233203651054 Q391A-I396A 0.446253219486108 M392A-S399A 0.416564733824213 G389A-S399A 0.412239602310813 G386A-S399A 0.288675325265759 M392A-A398A 0.261063595452088 Q391A-A398A 0.256208572921868 Q391A-G397A 0.255892359160661 G383A-Q391A 0.246800830183641 G389A-A398A 0.234985050364073 M392A-G397A 0.226047069571804 I388A-G397A 0.215143270604065 Y379A-D387A 0.20623043995352 A382A-D387A 0.205814071113004 D387A-M392A 0.171634028647552 G390A-A398A 0.163573824889121 G386A-A398A 0.15257931391757 D387A-A398A 0.146066976913361 A382A-G389A 0.141858744978399 L394A-I400A 0.136352337241874 D387A-S399A 0.125633524033198 G393A-S399A 0.120424437081127 Y379A-I388A 0.112978103951709 E380A-L385A 0.101275528450135 L385A-A398A 0.0975808167891598 L385A-G390A 0.0925698151500558 G386A-G393A 0.0861085953660163 I388A-A398A 0.0735932672543713 G390A-I400A 0.057383539090976 L385A-G393A 0.0565312386068619 A382A-G390A 0.0541108859483002 L385A-S399A 0.0464405898209199 V381A-G390A 0.04437080536563 D387A-G393A 0.0433919570668495 I388A-I400A 0.0429938023129353 A378A-L385A 0.036248788690284 A378A-D387A 0.0254144602154744 G386A-I400A 0.0250870495080719 A378A-G386A 0.0167517566535029 G386A-G397A 0.00983501596548081 Q391A-I400A 0.00927330023576589 E380A-G390A 0.00227543281374221 L385A-G397A 0.000428998447270401 G386A-L394A -0.00580521385168953 L384A-S399A -0.0113232315362777 E380A-G389A -0.0146313067250254 V381A-G386A -0.0254720770047108 E380A-I388A -0.0303835990246939 D387A-G397A -0.0390927431973327 G386A-I396A -0.0408913704519662 G389A-G397A -0.044280561487855 G386A-Q391A -0.0459962829935883 D387A-I400A -0.0495890461309005 Q391A-S399A -0.0508860599351562 Y379A-L385A -0.0598617941771471 I388A-I396A -0.0643583193964483 I388A-L394A -0.0647885327759186 D387A-F395A -0.0655498370885936 G383A-I388A -0.0720933650087723 G386A-F395A -0.075423140642159 G390A-I396A -0.0783747512869191 A382A-Q391A -0.0827473752270067 L384A-G393A -0.084998826222634 Y379A-G386A -0.0944697596329307 E380A-D387A -0.0945714501832889 L385A-I400A -0.0967168184899787 D387A-I396A -0.0994991700611654 L384A-M392A -0.107077223643975 G383A-G389A -0.11514570000194 L385A-L394A -0.116407042037716 G383A-G390A -0.118860704516885 G386A-M392A -0.125333545179353 F395A-I400A -0.13274021316718 V381A-G389A -0.133786647976288 E380A-G386A -0.13734848757521 L384A-G390A -0.145402531390681 G390A-S399A -0.151791395909334 G389A-F395A -0.153146234662685 L385A-Q391A -0.164129208548035 L384A-G389A -0.166901294411328 V381A-D387A -0.18002594578409 G389A-I396A -0.191252060372921 V381A-I388A -0.194888435643228 L384A-Q391A -0.195574996700755 G389A-I400A -0.203212223230977 I388A-F395A -0.212531943536182 G393A-A398A -0.214778101930462 L394A-S399A -0.216912059670207 G383A-M392A -0.227041102394527 I388A-G393A -0.230148420816502 L385A-M392A -0.260823018189604 G390A-F395A -0.263591177961792 A378A-L384A -0.276172751178072 A382A-I388A -0.286986302055064 G393A-I400A -0.288203003494631 D387A-L394A -0.289963690722375 I388A-S399A -0.352550656165535 M392A-I400A -0.398420285952908 A378A-G383A -0.400926446899147 G390A-G397A -0.403444323349059 G389A-L394A -0.414916221792878