[Wed Aug 24 17:23:04 2016] >Input file: TM4NYKCGD.pdb >TM segments: A6-42 MAIDEN score = -6.3937 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- BBeads pair Empirical energy ----------- ---------------- C9A-L14A 0.69063916713602 F10A-A15A 0.560646436398735 L17A-T22A 0.355971395047998 Y28A-V34A 0.327890410856848 L16A-C21A 0.325045942332583 L8A-S13A 0.319877290598661 L19A-R24A 0.314285990537423 G12A-L19A 0.237367456915429 L17A-N23A 0.171501430236956 A18A-I25A 0.16348461571747 M11A-L16A 0.156202958036213 V20A-Y28A 0.153881964756049 T22A-Y27A 0.13264875382144 Q26A-Y31A 0.12961457040948 Y27A-V34A 0.129173621533441 R24A-P32A 0.114475839233389 N23A-Y28A 0.112568744613195 Q26A-H33A 0.103332168588801 Y27A-H33A 0.10225044407067 N23A-Y31A 0.0969402721744332 A15A-N23A 0.0927761651115429 A15A-T22A 0.0888240458926401 C21A-F29A 0.0879047050418941 A18A-Q26A 0.0794826747692068 I25A-P32A 0.0778955238320835 A7A-A15A 0.067111364129504 N23A-P32A 0.0663626834344289 T22A-Y31A 0.0636803799138079 I25A-H33A 0.0581279387859323 F10A-L16A 0.0518931191532319 L16A-R24A 0.0509442008359211 L14A-T22A 0.0426922535817349 L17A-Q26A 0.0398421788691987 L37A-A42A 0.0381133538906528 A15A-C21A 0.0218553411766775 W6A-L16A 0.0174763439029038 R24A-Y31A 0.015566664759298 S13A-V20A 0.00844052515386373 F10A-A18A 0.00825058197977135 M11A-L19A 0.00507625897441333 S13A-T22A 0.00166053789502918 R24A-H33A 0.00158939325381269 A15A-V20A -0.00024123075277549 A7A-S13A -0.00157749022167875 S13A-C21A -0.00844291462762881 L8A-L14A -0.0106985817447929 G12A-V20A -0.0108973759224349 C21A-L30A -0.0129012404972499 Y28A-H33A -0.0182053440668284 Y27A-P32A -0.0290630898048734 C9A-A18A -0.0332059868511932 W6A-A15A -0.045760967955764 L16A-I25A -0.0483240645622773 C21A-Y27A -0.0520779079297666 V20A-Y27A -0.06189779818434 N23A-F29A -0.0675064421501622 L14A-N23A -0.0677452611964959 T22A-Y28A -0.0678428382979795 W6A-M11A -0.0683443862187882 R24A-F29A -0.0716756056724526 T22A-L30A -0.0733862080240439 T22A-F29A -0.0827003530759924 N23A-L30A -0.0890183169540988 L19A-Y27A -0.0895151458412591 L19A-Y28A -0.100090121133733 L17A-I25A -0.104448118671689 A18A-Y27A -0.113219862679154 F10A-L19A -0.117027554852059 L16A-N23A -0.118502264611358 V20A-F29A -0.130210153135709 L8A-L17A -0.130926492794122 F10A-L17A -0.133455567340881 L8A-L16A -0.133820904802608 F29A-V34A -0.136938500279869 I25A-Y31A -0.14246476296226 W6A-L14A -0.154006620177516 M11A-V20A -0.154710026901788 A18A-N23A -0.154827863875563 L14A-C21A -0.157305047595269 A7A-L16A -0.161384693938073 C9A-L17A -0.162126532432392 L14A-L19A -0.166356723637405 W6A-G12A -0.166564999706888 L19A-Q26A -0.168055808018271 L17A-R24A -0.175489000913457 L8A-A15A -0.18291308445342 W6A-S13A -0.187694466289828 S13A-L19A -0.21043812583422 L16A-T22A -0.218314122893389 M11A-A18A -0.226692692924327 A18A-R24A -0.235356414976094 G12A-C21A -0.23990169465832 G12A-A18A -0.265509342338976 C21A-Q26A -0.266560400683778 A7A-L14A -0.275255239546287 R24A-L30A -0.277657275340964 C21A-Y28A -0.302134017151474 C9A-L16A -0.34669907177333 C9A-A15A -0.363520468180585 M11A-L17A -0.377107659039599 I25A-L30A -0.378620454154205 L14A-V20A -0.379838789622656 G12A-L17A -0.398248590953618 L19A-I25A -0.404620030925892 V20A-Q26A -0.460193228623733 V20A-I25A -0.464626423239157 A7A-G12A -0.479042856403395 S13A-A18A -0.535451019129868 Q26A-P32A -0.607752591150877