[Wed Aug 24 17:27:32 2016] >Input file: TM4QNDCGD.pdb >TM segments: A15-28_A48-61_A71-85 MAIDEN score = -12.1224 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- BBeads pair Empirical energy ----------- ---------------- T60A-W72A 1.18965051951787 Y52A-F79A 1.0126019155163 I61A-W72A 0.856873951684654 W49A-M85A 0.766073398459738 L50A-Y82A 0.645686891830067 W59A-W72A 0.614278565884769 W49A-V83A 0.605985988791833 W72A-L77A 0.572259873348951 L16A-I71A 0.524896246629005 T26A-M81A 0.489782274134671 I55A-N75A 0.484165029190695 P23A-L77A 0.45594091670411 T60A-V73A 0.429595414313272 S53A-L80A 0.428161112286168 L57A-F79A 0.414196248103964 S53A-G78A 0.412077256969534 S53A-F79A 0.406258625654997 F79A-A84A 0.403448619227319 W49A-F54A 0.400104583574961 P23A-N75A 0.389896913849085 G19A-I71A 0.380029838625617 L20A-V73A 0.376581602714838 M18A-I71A 0.373876672408981 C76A-M81A 0.369480002429916 T60A-C76A 0.367674637950735 L57A-C76A 0.363641215623336 F54A-F79A 0.363443770480387 Y52A-L57A 0.353471161767 W59A-C76A 0.351088759779635 S53A-V83A 0.338153149117328 W59A-I71A 0.326611872513539 I55A-F79A 0.318490124228852 L16A-V73A 0.312809946796444 L50A-V83A 0.288999620848317 L20A-A25A 0.286801607073031 S53A-G74A 0.285051277712435 G19A-N75A 0.283762499242912 A56A-L77A 0.283708563020411 L51A-A56A 0.278719263714416 L20A-L77A 0.271105690850009 G19A-W59A 0.260337087939349 S22A-A56A 0.259358678793054 A56A-W72A 0.258390427416053 A56A-F79A 0.25821102787736 L16A-G74A 0.253874552966656 P23A-S53A 0.233457191171523 P23A-G74A 0.214149994303286 M18A-G74A 0.212786302002041 W59A-N75A 0.211266708828438 Y52A-A84A 0.208390921665695 L77A-Y82A 0.205661850404268 G19A-V73A 0.203353335680641 T48A-G78A 0.201235329566512 A25A-G74A 0.195254674571732 L58A-N75A 0.190857881388453 I55A-T60A 0.187610505227255 I61A-G74A 0.18688620130866 Y52A-W59A 0.177931877553455 T26A-C76A 0.17647607223244 T26A-T48A 0.17334411648502 F54A-W59A 0.171670141114035 N75A-L80A 0.171141548565815 T26A-G74A 0.170216029864361 V17A-G74A 0.169449375683151 F79A-M85A 0.166606737786314 L20A-N75A 0.165892115349155 L24A-M85A 0.164666098133813 W59A-L80A 0.163722203186348 G74A-A84A 0.161636831452177 W49A-L77A 0.158697728631268 L24A-C76A 0.157141051662259 L50A-C76A 0.156771818137304 W49A-C76A 0.154778538824576 L51A-Y82A 0.150042369937333 G19A-W72A 0.147982877570622 T26A-W49A 0.145966715739964 G19A-Y52A 0.14539572533012 I55A-I71A 0.143663461116932 I21A-G74A 0.142908660018066 I21A-Y82A 0.141401184121275 G19A-F79A 0.138053434106442 I21A-G78A 0.137677481616015 A25A-Y82A 0.137545863317901 P28A-G78A 0.136527929217717 S22A-Y52A 0.134621037911845 G19A-M81A 0.133685149321903 G19A-T26A 0.13282038913122 I61A-N75A 0.132552284150945 W49A-Y82A 0.129467131162786 L80A-M85A 0.128106159080287 S22A-G78A 0.127433788491355 L16A-W59A 0.126328517986688 S22A-V73A 0.126023854954513 G19A-I55A 0.123034153864332 I21A-T26A 0.122301962193312 L50A-L77A 0.122000004679372 I61A-G78A 0.121138247246153 L58A-V73A 0.120629668866688 P23A-W72A 0.120371996279127 L16A-P23A 0.119844633669153 A25A-N75A 0.1184917077327 N75A-M85A 0.114513608746173 L51A-L77A 0.11414742251938 V17A-V73A 0.111058915429822 C76A-M85A 0.110154602740357 L58A-L80A 0.109697722123218 L51A-L80A 0.108248236054629 L20A-Y82A 0.106472729636432 W59A-V73A 0.105117769407648 L16A-S22A 0.104018449504373 L16A-C76A 0.102331253649583 P23A-M81A 0.101564549657567 L16A-G78A 0.0999915313116784 V17A-T26A 0.0976751939852445 L24A-Y82A 0.0976188144456189 L20A-L57A 0.0970336231155247 G19A-L80A 0.0955671528804558 L24A-V83A 0.0931708392971657 P28A-A84A 0.0928428146272235 G19A-T60A 0.0924565711201333 A25A-V73A 0.0917035858806807 L51A-M81A 0.0908037029276467 V17A-N75A 0.0894267915922596 G78A-V83A 0.0890987540429151 I21A-C76A 0.0879608169538678 L58A-Y82A 0.0864440280198853 Y52A-Y82A 0.0855650746621244 T26A-S53A 0.0840153884016784 P23A-C76A 0.0836169053372435 G19A-S53A 0.0802410469823704 G19A-A56A 0.0758543228004331 I55A-G78A 0.0744347156648217 L16A-L24A 0.0743569261729116 I21A-M81A 0.0723410307433441 L50A-N75A 0.0711486548418248 S53A-W72A 0.0697198613022686 C76A-Y82A 0.0691576975234991 S53A-V73A 0.0682938685178835 L50A-F79A 0.0680742795001237 M15A-I71A 0.0677252374890323 L16A-I21A 0.0662580355762404 A56A-G78A 0.0653777242380551 A25A-A56A 0.0650664176807454 I61A-L80A 0.0646295215602928 M15A-G78A 0.0623966541335426 M15A-C76A 0.0614194742165832 M15A-P23A 0.0611760937012866 S22A-A84A 0.0590843660187348 S22A-L80A 0.0585370276851602 M27A-M85A 0.0581716785073187 F54A-I71A 0.0575238767657442 V73A-L80A 0.0559702705332743 G19A-L24A 0.0555752050276901 S22A-M85A 0.0546245651095842 A56A-A84A 0.0533302803762441 M18A-F79A 0.0520623046722961 L20A-I55A 0.0496570593362904 P28A-L77A 0.0484758240737371 A25A-A84A 0.0468010431421306 L58A-L77A 0.0431717871700243 S22A-W72A 0.0425712067745043 P23A-I71A 0.0415186302113884 P23A-L50A 0.0391267349601883 P23A-A84A 0.0358097735619536 V73A-M81A 0.0353471835767611 P23A-V83A 0.035050917203288 L51A-C76A 0.0341495209918623 L20A-M81A 0.0335289799034992 P23A-M85A 0.0333916167303128 L57A-N75A 0.0316213997182989 M27A-G78A 0.0307812396445151 A25A-M85A 0.0306109168584445 L16A-T60A 0.0292234961518236 M18A-T26A 0.0290448504167002 T48A-M81A 0.0289457712058709 L51A-L57A 0.0276953121705947 L50A-I55A 0.0268156205045029 F54A-M85A 0.0267298894482288 A25A-C76A 0.0255193643848179 A56A-M85A 0.024431559337118 S22A-I55A 0.0241764048876689 W72A-M81A 0.0238788429891326 G19A-L58A 0.0235967023212451 V17A-G78A 0.0211484840243039 I21A-A56A 0.0190064341228 V17A-I71A 0.018916526411731 M18A-A56A 0.018805350347606 L16A-L77A 0.0178764082187843 Y52A-I61A 0.0171832040451694 A56A-I71A 0.0163340763990902 I55A-A84A 0.0138111426434415 N75A-A84A 0.0114869232891177 A56A-G74A 0.00926386106318056 P23A-F54A 0.00798865587077024 W72A-Y82A 0.0079666302094159 L51A-G74A 0.00690788455409574 G74A-V83A 0.00666393542239607 I21A-P28A 0.00642930590273139 F54A-A84A 0.00564930736956271 P23A-W49A 0.00260301619314696 T48A-S53A 0.00170460407028816 M18A-G78A 0.000735080452217485 T60A-M81A -0.00284738413689434 L58A-G74A -0.00319566382692216 T26A-L51A -0.00340567379961909 T48A-L80A 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