[Wed Aug 24 17:18:19 2016] >Input file: TM4X5MATD.pdb >TM segments: A36-55 MAIDEN score = -9.9460 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- M42A-W50A 0.250887998989226 Y40A-T45A 0.0852261609190919 G46A-G54A 0.0790577650267139 F43A-Y53A 0.0744341087006717 L44A-W50A 0.0348575467276913 S36A-L44A 0.0329937315629474 S36A-T45A 0.0297015258427349 Y40A-W50A 0.0176281746902713 I48A-I55A 0.0138265427158846 F43A-A52A 0.000523714000303599 L44A-G54A -0.00350871325829893 M42A-I51A -0.0156349650881324 V38A-V47A -0.0183749911267581 T45A-G54A -0.0199720890244937 V38A-G46A -0.0226797705290123 L44A-A52A -0.0279916622393364 T45A-A52A -0.0311085586661335 M39A-V47A -0.0329734227508789 V47A-I55A -0.0354954937191394 V37A-T45A -0.0361520346813116 I41A-S49A -0.0425664082325841 F43A-I51A -0.066656900332049 G46A-Y53A -0.0728340992603878 M39A-G46A -0.0743130949755608 V37A-G46A -0.0887374768518714 F43A-S49A -0.092256639075371 S36A-F43A -0.0929487563063238 G46A-I55A -0.102794547799049 V47A-G54A -0.112195091020187 M42A-S49A -0.115563586666738 V38A-F43A -0.117100446595204 T45A-Y53A -0.131077367855016 L44A-Y53A -0.131448569995852 W50A-I55A -0.133384765349755 F43A-W50A -0.147450454963232 Y40A-S49A -0.148771474800925 I48A-Y53A -0.15236726788658 S36A-I41A -0.166828362516902 I41A-W50A -0.167056995718341 I41A-I48A -0.167950504569172 S36A-M42A -0.191791595855313 Y40A-I48A -0.202924809945886 Y40A-G46A -0.208266505432638 I41A-V47A -0.233128288228226 G46A-I51A -0.237109991988533 I41A-G46A -0.23762252384461 T45A-W50A -0.24358955470196 L44A-S49A -0.245724764289866 V37A-L44A -0.247355554302618 M39A-I48A -0.256618630175436 S49A-G54A -0.256904641062629 V38A-T45A -0.257316847628959 I48A-G54A -0.25875721177133 M39A-T45A -0.263957927564917 G46A-A52A -0.271830842287739 V47A-Y53A -0.273017345162043 T45A-I51A -0.276471170408717 F43A-I48A -0.286314975087278 L44A-I51A -0.286773322825104 V37A-F43A -0.288323342691809 V47A-A52A -0.322419443136614 S49A-I55A -0.352748070108046 M42A-V47A -0.361711414332688 V37A-M42A -0.363201896910614 M39A-L44A -0.374793769878528 Y40A-V47A -0.386055408837038 V38A-L44A -0.405012654292426 M42A-I48A -0.407158442359999