[Mon Aug 29 16:39:45 2016] >Input file: TMA0A017N8R7M1G.pdb >TM segments: 572-587_ 612-639 MAIDEN score = -5.6355 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I575 -Y580 0.894718646067011 V587 -G612 0.708322415580946 I576 -L582 0.68973200264947 V587 -W615 0.686432105078754 V587 -K614 0.674959151426774 L585 -W615 0.626053724337492 A625 -F630 0.60391299478891 I576 -V581 0.571317402224921 Y586 -W615 0.547478041012277 L618 -F623 0.525008738905937 I634 -N639 0.524494328338907 K622 -N639 0.410459206353226 V587 -S616 0.388718676167198 Y617 -Q628 0.37332959695365 D613 -R620 0.352543904166706 Q619 -P629 0.341316566959417 D613 -L618 0.338920841491063 Y586 -D613 0.337686019161268 K614 -R620 0.330841357663657 Y586 -S616 0.303504988839362 K622 -A627 0.284581146573536 Y617 -K622 0.283832859986484 V587 -Y631 0.280096883950733 N577 -L582 0.266913700267601 G612 -Q628 0.245749706739349 V572 -Y631 0.22214652209377 Y617 -A627 0.22139409897253 T584 -I634 0.206052905198509 R620 -Y631 0.201507765284306 Y586 -N626 0.199270059939188 S616 -P629 0.198098964227151 G612 -N626 0.181372929846594 L582 -N636 0.180234179081666 L585 -N626 0.177155099200808 T584 -Q619 0.175182716055472 R620 -P629 0.174247216026588 G612 -P629 0.172852368641691 Y631 -G638 0.171306654164112 L585 -G612 0.171190947482413 T584 -K614 0.168766003855781 F623 -Q628 0.163561547348602 N577 -I583 0.161929161692928 I576 -I634 0.161126976777553 K622 -D635 0.159908292971825 F623 -F630 0.158707928288785 T584 -P629 0.151605072736539 Y586 -A627 0.138581785820938 K622 -I634 0.13611124280331 F623 -G638 0.135181496863404 G624 -V632 0.133323478956462 Y580 -N636 0.132241176547946 V587 -F630 0.128627060478828 V587 -V632 0.125900982076039 Y580 -G638 0.124969017800936 L618 -Y631 0.122917479757226 L633 -N639 0.119832499221253 S616 -V621 0.119662093614783 L585 -V632 0.11917504659814 K614 -Q619 0.118269292906344 G624 -P629 0.116626383880927 G612 -A625 0.116133711375102 S574 -V581 0.115594202269595 V621 -A627 0.114530331533807 V587 -R620 0.112128441884328 A627 -V632 0.109567196617967 S573 -V581 0.107540714247987 G612 -A627 0.106753871605766 L582 -D635 0.104076965774642 Y617 -P629 0.103842028021401 I583 -Q619 0.102969113976404 T584 -G612 0.10085793409891 L618 -G638 0.100212606065503 K622 -F630 0.0969107706660983 V572 -V581 0.0913016313638693 D613 -K622 0.0905189908444065 I583 -G638 0.0896543766544973 L585 -L633 0.0888515687553304 L618 -N626 0.0887238909820347 I576 -T584 0.0872168378806558 V587 -Q628 0.086985398887613 L585 -R620 0.0848055481294663 I575 -V632 0.0777622563188309 N577 -Y631 0.0761341414893733 Y617 -N626 0.0713643746082995 N626 -V632 0.0699465827193918 S616 -Y631 0.065084169216366 I583 -W615 0.0639451657633874 G624 -N639 0.0634202030568675 R620 -V632 0.0626288542396454 Y580 -V632 0.0625381379163028 L585 -A625 0.0613837482701185 K622 -L633 0.0613541021251747 G612 -R620 0.0556551765377957 Y580 -N639 0.051913633766971 V581 -G638 0.0516226064737602 L582 -L633 0.0487974472440322 T584 -S616 0.0462079131901252 F623 -N639 0.0437340521129688 L618 -I634 0.0402618500575116 L618 -P629 0.0402118462430616 I575 -I634 0.03933348767975 D613 -N626 0.0373268113145095 R620 -Q628 0.0368347732345535 K614 -F623 0.0349548064319514 L585 -F623 0.0345857882343559 I583 -I634 0.0342220489228726 T584 -D613 0.032945534869381 G624 -Y631 0.0325432026963934 S574 -L582 0.0319042062699412 L582 -G638 0.0302292398697301 G624 -L633 0.0263765454874603 K622 -G638 0.0258746821820337 T584 -L618 0.0206299043642653 I583 -P629 0.0197294053769907 K622 -E637 0.0187137415525547 N626 -Y631 0.0186694609965494 W615 -R620 0.0175523970600764 W615 -A627 0.0166232261658017 R620 -F630 0.016398603196381 W615 -F623 0.0162019622256686 S573 -L582 0.0158353619819023 L585 -V621 0.015377845848207 N577 -T584 0.0128614339893378 L585 -Y617 0.0119958740449122 W615 -Q628 0.00779734082478223 V572 -Y580 0.0065001816305843 Q619 -I634 0.00316251488216768 I576 -F630 0.00124196332402082 D613 -A627 0.000740591576132044 Y586 -F630 0.000351919285130897 L582 -F630 -0.000318275003961865 G612 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