[Fri Aug 26 16:33:57 2016] >Input file: TMA0A024R3A5M1D.pdb >TM segments: 30-53 MAIDEN score = -4.5351 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P40 -N45 0.376772816177953 H43 -S50 0.289019093618665 T35 -H43 0.218391123509842 E34 -V39 0.204810814547858 A33 -S41 0.201738672833949 M32 -S41 0.18080902468649 E34 -P40 0.164781450964907 M32 -D42 0.141001691759705 A30 -Q37 0.138677028082816 T35 -T44 0.12794858436054 A33 -P40 0.123012021298004 T47 -K53 0.118178192725527 A31 -V39 0.110754401282534 M32 -P40 0.110004961938241 T35 -P40 0.0956738120486662 E34 -H43 0.092832008752362 E34 -D42 0.085716748144556 T44 -V52 0.0657555690771376 D42 -N49 0.0505611841066815 T47 -V52 0.0450552718366113 L36 -H43 0.0360939185349771 T44 -N49 0.0358261929903277 D42 -S50 0.0265537741188049 A31 -H38 0.025599342621998 A30 -L36 0.0132051016106214 S41 -S48 0.0066584885933807 V39 -T47 0.00363084872436059 Q37 -N45 -0.0173050623325697 H43 -N49 -0.0191920412790947 S41 -E46 -0.0207489327098003 Q37 -E46 -0.0231076437446026 D42 -S48 -0.0300301434338733 S41 -N49 -0.0308310180388305 E46 -K53 -0.0325968573332727 L36 -T44 -0.0430354227893215 S48 -K53 -0.06006951702577 Q37 -H43 -0.0621407492325821 D42 -T47 -0.0628321746012303 T35 -N45 -0.0645324438547643 N45 -V52 -0.0649910446929423 V39 -S48 -0.0683359584123808 E34 -S41 -0.076088111249387 H38 -N45 -0.0801800950785032 A30 -T35 -0.0927494026238413 E46 -V52 -0.109153244881302 H38 -T47 -0.11296316871275 V39 -N45 -0.117618190805196 A31 -Q37 -0.118429869344657 H43 -T51 -0.119444855447029 Q37 -D42 -0.122668651516799 T44 -T51 -0.123175721071927 P40 -S48 -0.126345168352199 H38 -H43 -0.133715635620771 H43 -S48 -0.13713297735514 P40 -E46 -0.137826737837513 H38 -E46 -0.141358719580486 H38 -T44 -0.144398913767757 A30 -H38 -0.149281100328019 M32 -H38 -0.151371067749611 A33 -D42 -0.155584935368805 T44 -S50 -0.161237454513569 E46 -T51 -0.161817436360923 L36 -N45 -0.178976329908308 L36 -D42 -0.179806571594406 N45 -T51 -0.181028566232621 T35 -D42 -0.185537182130409 N45 -S50 -0.204742437226889 Q37 -T44 -0.212559991422116 M32 -V39 -0.222646750567112 S41 -T47 -0.223475120955193 P40 -T47 -0.231623334632529 V39 -T44 -0.240274176472506 T35 -S41 -0.240414321471127 V39 -E46 -0.241443219961349 A31 -L36 -0.272606454660996 L36 -S41 -0.302510982305063 A33 -V39 -0.370492180718452 M32 -Q37 -0.378176422548454 A33 -H38 -0.485578413612408