[Mon Aug 29 16:54:06 2016] >Input file: TMA0A031H8E3M1G.pdb >TM segments: 423-430_ 533-556_ 558-569 MAIDEN score = 17.0887 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- E552 -G563 10 H553 -G563 4.20442219187271 L555 -R560 1.61786904435982 R554 -I559 0.933884174817051 D537 -H553 0.591394549275207 E552 -I565 0.540917379464718 P534 -G539 0.533574759964393 A538 -T564 0.50406058372608 H553 -R560 0.4681988446852 H553 -T564 0.462024185095835 E552 -P567 0.40532298766986 P534 -A540 0.392778679216302 G539 -I565 0.373177168517698 H553 -H568 0.372610896222181 R554 -G563 0.361716679790475 L533 -A540 0.345735627228377 G539 -T564 0.318588627865414 D537 -V542 0.293481887584274 E552 -R560 0.279726170213687 G428 -H568 0.267855845524664 H553 -L558 0.257727221343383 A538 -I565 0.248610617292774 A538 -G566 0.243066222619997 D545 -V550 0.242756853218213 A538 -G563 0.242432521070233 L533 -T564 0.241455636218333 G539 -N551 0.229389894321869 G546 -N551 0.229109155605213 A543 -Y556 0.220878867301884 N551 -G566 0.212435481090909 A540 -H553 0.207752661624347 N551 -Y556 0.202491794958293 H553 -R562 0.198639508554672 N551 -R560 0.195294400041585 D537 -G566 0.191627125408438 G539 -Q561 0.191503498372618 N551 -G563 0.191071617990215 D537 -R562 0.189533147984389 Y556 -G563 0.188401968188213 T549 -T564 0.181587013618188 A536 -T564 0.180994291866213 A543 -T549 0.170241935066895 A536 -G563 0.165979357427529 G539 -A544 0.165057867185209 A423 -G428 0.164940382314282 A538 -R560 0.158530483155582 A543 -V550 0.158477864050683 R554 -Q561 0.151262799129557 G539 -H553 0.146951445828417 Q427 -R569 0.14630526459085 L555 -Q561 0.145081468314414 D545 -R554 0.137794694213477 T549 -G563 0.137352715576715 A536 -H568 0.132504112456365 A538 -N551 0.129025458174998 A540 -R554 0.128904472287172 D545 -N551 0.127496547848595 D545 -Y556 0.126308643595546 G539 -P567 0.125254654739128 D541 -G563 0.125183695791415 A535 -G563 0.124849775815872 A535 -R562 0.124843439653119 G548 -T564 0.119578654250454 A538 -R554 0.118325633268171 R560 -G566 0.116948053750054 A540 -R560 0.116046386534736 A538 -L558 0.115505763581444 A538 -L555 0.114606659834573 A536 -P567 0.108425495279597 A543 -R560 0.106595900715391 V542 -V550 0.104774905217013 A544 -Y556 0.102878799449991 D541 -L558 0.102580649506738 P534 -R562 0.102208031510359 D537 -E552 0.101384472955623 A544 -G563 0.100419430633397 G539 -R560 0.0962787003344607 Y556 -T564 0.0922582838331438 A540 -G566 0.0887887859719925 G548 -R554 0.0885800866646393 A540 -Q561 0.0882355104532631 D537 -P567 0.0860064091240933 V550 -G566 0.085544921854364 R562 -R569 0.0846827130005448 V542 -Y556 0.0828184554037261 Y556 -Q561 0.0822407922667416 L426 -R569 0.0811684933885019 H553 -P567 0.0807564310914097 L533 -G566 0.0798012483482027 G546 -Y556 0.0752137864170397 A543 -G563 0.0747841416294257 A540 -N551 0.0745583699836461 E552 -H568 0.0744522523312852 L555 -R562 0.0733743349705414 A540 -L558 0.0627161252090351 T547 -R554 0.0593144155990961 L533 -V542 0.0585495023214806 A430 -R569 0.057535597989566 A538 -I559 0.0561658730216277 R554 -I565 0.0545675944516923 H553 -I559 0.0536066160412094 A543 -L555 0.0531452235721908 A536 -I565 0.053113298147512 A424 -V429 0.0515977346837992 A536 -V542 0.0507231488519082 G428 -G566 0.0505685654675152 L558 -G563 0.0467000940919071 A544 -I559 0.045548249538035 D541 -E552 0.0451093214224674 V550 -R562 0.043311694180121 G546 -H553 0.0414321813691503 A544 -L555 0.0412321543766971 A538 -H568 0.040207347450151 D541 -H553 0.0391803250468712 A536 -G566 0.038688467689739 L533 -G563 0.0383149472207323 L555 -T564 0.0354551291593594 D541 -R562 0.0351701442620174 V542 -L558 0.0332906877007488 T549 -Y556 0.0330431545084999 G539 -H568 0.0313146219077319 L533 -R562 0.0303032792737667 L533 -H568 0.0295583461959894 G546 -L555 0.0294904356803833 L533 -G539 0.0276706205090342 A544 -H553 0.0275059686971844 L426 -P567 0.0271325904346504 A535 -T564 0.026382502634039 A538 -H553 0.0251517730606579 L555 -G566 0.0245743580318927 D541 -N551 0.0240538548282923 D541 -I559 0.0235811354362272 A543 -H553 0.0231888211215017 D425 -A430 0.0221410709834633 N551 -I559 0.0202685184843996 G563 -H568 0.0199902134785441 A536 -R560 0.0198066861626804 A535 -D541 0.0195681234197975 G548 -H553 0.0184608776873332 L533 -H553 0.0171712718408776 V542 -T564 0.0145134688776105 A544 -R562 0.0144871280246841 G539 -I559 0.0119852761101371 A536 -Q561 0.0102213291877886 P534 -V542 0.00969541440846644 A535 -G566 0.00879979199081515 A540 -P567 0.00630541128466788 R554 -G566 0.000448912215519126 G548 -L555 -0.000808861194002253 G539 -G566 -0.00147829247000086 I559 -T564 -0.00239629389394125 L533 -A538 -0.00285130244096543 G539 -E552 -0.00324765307530761 D545 -L558 -0.00485807220077961 E552 -G566 -0.00501059955594352 T547 -Y556 -0.00583958663777917 E552 -R562 -0.00586407391036792 A543 -G548 -0.00677141830706773 T564 -R569 -0.00952662310954366 G539 -R562 -0.0115358185529293 A544 -N551 -0.0121425036016181 A535 -I565 -0.0145886018236513 D541 -G566 -0.0146058723696993 A536 -I559 -0.018325903502959 G546 -R554 -0.0188944083403926 V542 -Q561 -0.02231443129039 A538 -A543 -0.0230925708714791 D537 -L558 -0.0241685124302662 V542 -G566 -0.0266205962658548 A540 -I559 -0.0287851497588782 N551 -Q561 -0.0320185057925895 N551 -I565 -0.0363317942920762 A536 -D541 -0.0369698425585518 G546 -L558 -0.0423592004789439 A544 -L558 -0.0425232064389673 A543 -E552 -0.0481502178329856 R554 -R562 -0.0497353182604903 G546 -I559 -0.0504844240951994 V550 -Q561 -0.0510645086488435 R554 -T564 -0.0518690860226476 Q561 -P567 -0.0521855580003217 D537 -I565 -0.0529266284648591 P534 -G563 -0.0530816759511961 G428 -P567 -0.0620701322167556 A538 -Q561 -0.0623477402731505 A538 -R569 -0.0627215554074603 A535 -P567 -0.0628380922597294 N551 -L558 -0.0637197601329327 V542 -R562 -0.0652740146223083 V542 -R560 -0.0666221667046543 T549 -L555 -0.0670491172302801 R560 -I565 -0.067500139999555 P534 -G566 -0.068197454553538 D545 -L555 -0.068439171666113 L533 -P567 -0.0687946869829208 V550 -T564 -0.0702778922821023 V429 -P567 -0.0719823445032636 L426 -G566 -0.0738466711495809 V550 -Y556 -0.0751487734302856 G546 -E552 -0.0789769181525743 V542 -T549 -0.0801373765981634 A543 -N551 -0.0810995506905159 V542 -I559 -0.0820486101164128 G539 -R554 -0.0827057088891259 V429 -R569 -0.0842001330100022 D545 -I559 -0.087668054246784 A543 -I559 -0.0888848192534368 D541 -R554 -0.0890013848471995 R562 -H568 -0.0898805803292757 Y556 -R562 -0.0901998736738583 D541 -Q561 -0.0923708386673738 R554 -R560 -0.0927999473374728 A544 -T549 -0.093787339586384 T547 -L555 -0.094225237953559 L533 -Q561 -0.0957238612409755 A543 -Q561 -0.096962838836713 V542 -G548 -0.100925031292513 D541 -T564 -0.104964556286911 D537 -R560 -0.111735681618391 D541 -R560 -0.111894092335735 I559 -G566 -0.112859092891406 D545 -E552 -0.113628243506961 A543 -R562 -0.114761577736066 L533 -E552 -0.117839585436234 D537 -R554 -0.118134228625195 A544 -R560 -0.118136871413473 P534 -I565 -0.120676429868747 A543 -T564 -0.127695274665365 A544 -T564 -0.128176671371224 D537 -I559 -0.129440240985379 A540 -E552 -0.130512508185145 L555 -G563 -0.133019641920885 N551 -T564 -0.133715844860028 D537 -A543 -0.137283009732115 D537 -G563 -0.139752301751265 E552 -L558 -0.14363580507967 G428 -R569 -0.145196344495206 T549 -R554 -0.146999929669426 V542 -I565 -0.148641563038241 E552 -I559 -0.14964282604813 N551 -P567 -0.150641828485471 I559 -I565 -0.152283653387423 D537 -T564 -0.15803662761462 A536 -H553 -0.159866097930394 T547 -E552 -0.1603615063109 D537 -Q561 -0.160673768595621 G563 -R569 -0.160719358918079 A538 -E552 -0.165772234174776 L426 -H568 -0.167749489667078 D541 -I565 -0.167950387406335 P534 -T564 -0.168666181571992 V542 -R554 -0.172064260350512 P534 -D541 -0.172501577720308 V550 -I565 -0.174869905091114 A544 -R554 -0.176959727558001 D537 -L555 -0.178184220589749 V542 -N551 -0.178307473168804 A540 -G563 -0.17907122864232 V550 -L555 -0.180897138292269 D537 -Y556 -0.185074419384417 H553 -G566 -0.18979090425756 A540 -R562 -0.192896793882551 A535 -A540 -0.19631764457734 V429 -H568 -0.198403628245431 V542 -L555 -0.200063902442032 A536 -R562 -0.200448295123787 N551 -R562 -0.200490391523557 V542 -G563 -0.201297159774246 V550 -G563 -0.208565260003826 G539 -G563 -0.210972997325147 D537 -H568 -0.216500659625646 D545 -H553 -0.217412504591758 V542 -H553 -0.220871712388076 A538 -P567 -0.229433698035065 A543 -L558 -0.240328550945501 Q561 -H568 -0.244708297292721 A543 -R554 -0.249811586965915 A544 -E552 -0.250223780988056 L533 -D541 -0.255096040522357 L533 -I565 -0.261626981929779 V550 -R560 -0.264812051288463 A544 -V550 -0.266713579532098 H553 -I565 -0.277726311983738 D541 -Y556 -0.291930261233473 E552 -Q561 -0.293838806206724 A540 -I565 -0.314913676732627 V542 -E552 -0.31789857712494 A540 -T564 -0.32522744027942 A538 -R562 -0.345124032924411 E552 -T564 -0.351891087191854 Q561 -G566 -0.357025014754141 H553 -Q561 -0.357803695960753 R562 -P567 -0.458606915847711