[Fri Aug 26 16:55:49 2016] >Input file: TMA0A045I143M1D.pdb >TM segments: 41-50_ 54-70 MAIDEN score = -2.2666 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- S49 -I55 1.13435823927796 S49 -F54 0.729675785835813 L44 -S49 0.505656359012384 F48 -F54 0.389887313381573 R63 -L68 0.360117807271424 F48 -E56 0.320557076570657 R63 -N69 0.313506671800381 E61 -N69 0.261614580207905 T64 -H70 0.217653443333588 R59 -M67 0.217158555883068 E56 -T64 0.193155717230883 K45 -F54 0.172242476250998 K42 -T65 0.16523207346719 K45 -F58 0.15769237900098 E47 -F58 0.150168231611037 E56 -R63 0.144880753481612 K42 -S49 0.142047905999131 K42 -R59 0.136596788102669 K45 -I55 0.135100107564861 K42 -E61 0.120968886923922 S50 -I55 0.120128563474466 E61 -M67 0.118310249709111 F48 -F58 0.114696333730354 S50 -R57 0.110307590023488 V41 -A62 0.109949385268554 K42 -E47 0.100457592191475 V43 -F58 0.0985125131205136 E47 -E56 0.0831765485715277 E61 -A66 0.0807711075387494 R57 -A62 0.0804201490474066 S49 -A60 0.0802448742587849 R57 -R63 0.0700756132750406 F54 -A62 0.0673810087577031 R57 -T65 0.0673436162559252 I55 -R63 0.0584723719173817 V43 -R59 0.0557504704373724 K42 -F58 0.0373675233535482 A60 -L68 0.0373225372856245 I55 -T64 0.0367562308719793 F48 -R57 0.0346149355737353 S49 -R59 0.0262660706544386 F54 -R59 0.0259632125067339 K42 -F54 0.0177211224869325 V43 -F54 0.0172374427826125 R63 -H70 0.0171499249409077 K45 -S50 0.0149386490196932 S46 -F54 0.0124262448369077 F58 -M67 0.0115650404748986 S49 -E61 0.00776780011893763 A60 -M67 0.00248862871236888 V43 -S50 0.000410551594444808 L44 -E61 -0.00221393381509394 A62 -N69 -0.00270101025550923 L44 -E56 -0.00458067735512957 L44 -A60 -0.00742841351633494 L44 -A62 -0.0116469463381108 S46 -I55 -0.0163353059819507 V43 -A62 -0.0235779291024635 F48 -R59 -0.0267599997042876 L44 -R57 -0.0304565550336742 V43 -F48 -0.0317206796739047 V41 -A66 -0.0334548241330825 R59 -T65 -0.0388805543634489 R57 -T64 -0.0450653766392675 V41 -S46 -0.0459746763380862 F58 -A66 -0.0509682405081486 V43 -E56 -0.0549885872993978 K42 -I55 -0.0603273951402064 S50 -F58 -0.0641015611529857 S46 -F58 -0.0641434958420313 R59 -L68 -0.0667637501853808 L44 -I55 -0.0688558018768504 S49 -E56 -0.0704851078889517 F58 -R63 -0.0707264401068555 E47 -I55 -0.0710628074361499 S50 -E56 -0.075932378511576 S50 -R59 -0.0760967498814686 E47 -R57 -0.0892099877028953 S49 -R57 -0.0919973668620347 E56 -A62 -0.0949265294112864 K42 -A66 -0.098505685085132 E61 -L68 -0.109229206456409 F54 -R63 -0.113781799603842 T65 -H70 -0.113921326633891 K42 -R63 -0.116059687633886 E56 -E61 -0.116262038439637 V41 -F58 -0.11990646948806 R57 -A66 -0.123163844824923 S49 -A62 -0.127567222283016 F54 -E61 -0.134989217782884 T64 -N69 -0.137208147883406 K45 -R59 -0.140734360656216 V41 -T65 -0.141330289024967 V43 -E61 -0.146419248085198 I55 -A62 -0.153340993600239 V43 -I55 -0.155463435836483 E47 -R59 -0.161394307996024 A60 -A66 -0.172585478048399 L44 -R59 -0.175042003453035 A62 -L68 -0.184141890729189 E56 -T65 -0.184556927627612 I55 -E61 -0.192364079160159 L44 -S50 -0.20157096552233 R59 -T64 -0.204584099829223 V43 -S49 -0.210733328351846 A60 -T65 -0.221909344896081 K42 -R57 -0.226180637757105 F58 -T65 -0.22874616176018 L44 -F58 -0.233607845438362 L44 -F54 -0.24389437404658 R59 -A66 -0.245311576305515 V41 -R59 -0.268913579270737 F54 -A60 -0.278906996554596 S49 -F58 -0.286463627480391 V43 -R57 -0.28736684164668 K42 -F48 -0.292638767313909 A62 -M67 -0.296567163324403 F48 -I55 -0.32065486674474 E47 -F54 -0.322637946749936 F58 -T64 -0.353164123816691 K42 -A62 -0.354330561898536 I55 -A60 -0.363317537510376