[Mon Aug 29 17:05:34 2016] >Input file: TMA0A045J0P1M1G.pdb >TM segments: 158-192_ 236-243 MAIDEN score = -9.9207 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V159 -Y187 0.775829461444303 L169 -C175 0.759697345738232 L163 -V188 0.727820662196158 I160 -Y187 0.703669372249561 V159 -A180 0.525375687673753 E190 -P236 0.478430147126494 V186 -W191 0.405155178575353 I160 -V188 0.399872150687754 V167 -A176 0.396195435376268 A158 -A178 0.378258414976969 R162 -V167 0.370976850516106 A165 -A174 0.370336871768237 S177 -P236 0.364888545451298 L169 -A176 0.355258314900062 A170 -A178 0.349267328491969 R161 -N189 0.345237796478309 L163 -S177 0.319550778475829 A178 -A184 0.306533082565502 T164 -E190 0.298002543455407 V185 -D243 0.280643697902204 G182 -N189 0.273326182931657 R162 -N189 0.267214335298243 V159 -V186 0.259985923500091 R161 -A180 0.25827346596387 Q192 -Q237 0.244127680175297 T179 -Q237 0.234897586548354 V181 -V186 0.229415181703071 C175 -Q237 0.226553013034087 G182 -V188 0.220549546618087 E190 -Q237 0.217033661876932 R162 -V188 0.215997751846027 L169 -S177 0.215288410121889 V159 -V185 0.207857606952111 C175 -I240 0.205590345547366 T179 -D243 0.194025255589326 T164 -N189 0.184622527973305 A180 -D243 0.183332177417022 V181 -I240 0.182894343039776 V188 -S239 0.180848104750194 T164 -A184 0.175417771064774 G173 -P236 0.165844640995462 V159 -V181 0.165029571181044 A171 -S177 0.143111892979686 A176 -I240 0.140282023698941 N189 -S239 0.135344775897786 A168 -S177 0.133196837251363 V185 -I240 0.130127375365388 S177 -V188 0.129522648084675 A184 -Q241 0.125851130987448 A166 -P236 0.121953990656197 L163 -P236 0.118856215239976 A176 -S239 0.118050927498212 R162 -A170 0.116455720964967 S177 -N189 0.11634141357443 T164 -Q237 0.115443740151849 R161 -T179 0.110145987509986 A168 -V188 0.107981604765765 V167 -V185 0.107875832815902 R161 -V185 0.107564539514134 S177 -A184 0.107369476006871 L163 -V185 0.10508620316916 A172 -S177 0.104007515487383 A158 -V186 0.10350588705144 V188 -L238 0.103294459852749 V185 -L238 0.103153093585335 A178 -Q242 0.102628518262375 S177 -Q242 0.101790939579492 A183 -S239 0.100987622842162 A165 -A180 0.100904506429103 A158 -A166 0.100694705806992 A158 -T179 0.0997057498680833 A166 -A178 0.0983025726773163 A166 -A180 0.0982926051154394 A171 -Q237 0.0979281334797677 A166 -L238 0.0973361364347627 A158 -S177 0.0973025839473587 A165 -G173 0.0964725689826537 G182 -I240 0.096464477828355 T164 -A180 0.0962904455228131 V159 -A168 0.0947197348413935 V186 -Q241 0.0934252731833596 C175 -S239 0.0928702837093279 V159 -S177 0.0911907412481119 A184 -S239 0.0910349427579416 R161 -A184 0.0905311744731296 R161 -V188 0.0901067393237867 A184 -E190 0.0878201448213609 S177 -V185 0.0872079901816312 R162 -Q237 0.0865361806593712 S177 -Q241 0.0860765767799148 L163 -A178 0.0849394302906292 A158 -A183 0.0834443526394484 V167 -A180 0.0825480951820836 L163 -I240 0.0790064178392775 I160 -V181 0.0789437448701005 V185 -Q237 0.0781605041824018 A168 -C175 0.0763652005420978 A166 -S239 0.0746916095598831 A178 -Y187 0.0740948472349769 A166 -S177 0.0697700251831752 S177 -S239 0.0681263234871794 G182 -D243 0.0673382448802391 V186 -S239 0.0668803441963597 R162 -A174 0.0646815479432187 I160 -N189 0.061202606883211 A166 -A184 0.0595518065429625 A168 -Q237 0.0577866507851335 V159 -V188 0.0541798302879539 A165 -V185 0.0541714362103365 A165 -A184 0.0540608039148274 R162 -V181 0.0529264182842209 A180 -L238 0.052099209036643 R161 -V186 0.0507435996540642 A170 -L238 0.0500272134770228 I160 -S177 0.0448811153381112 A178 -N189 0.0439914513446933 V188 -Q237 0.0430426358711551 L163 -S239 0.0429457385277932 R162 -C175 0.0426437428483337 G173 -Q237 0.0424780136417846 R162 -Y187 0.039342663573914 I160 -A184 0.0391214956090771 L163 -V181 0.0389899470927952 V159 -G182 0.0382027444008797 N189 -Q237 0.0345155524264125 V181 -S239 0.0344025029556843 A178 -Q237 0.0342557589746055 R162 -V186 0.0319725316332868 I160 -Q237 0.0291796596020841 L163 -A174 0.0286217613673605 R162 -T179 0.0278145553720774 A183 -D243 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