[Fri Aug 26 17:09:48 2016] >Input file: TMA0A060BQ50M1D.pdb >TM segments: 248-262_ 268-283 MAIDEN score = -9.7726 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- K262 -M269 1.21474314933694 R272 -V277 0.42695835855279 V277 -R282 0.413151596337345 N257 -R272 0.336632576927921 E248 -F256 0.330311826140023 K262 -R272 0.309710351132553 F256 -D276 0.307362740785521 N257 -M269 0.297777456965676 F256 -F273 0.292002215861878 I249 -C258 0.284004959499066 M260 -Q270 0.252905810363731 D276 -L281 0.252165587378535 N255 -S275 0.249864300384905 D261 -D276 0.248172120844152 M260 -R272 0.247379522164312 C258 -E280 0.247289557430731 F256 -Q270 0.226384807217265 N255 -M269 0.226102347170865 F256 -V277 0.219353982592802 L252 -M260 0.202635926667629 K262 -D276 0.202425548796125 A251 -D276 0.195255829437844 A253 -D276 0.184019671335219 M259 -S278 0.178460442934632 L252 -S275 0.176446212319145 Q270 -S278 0.175065383693056 E248 -N257 0.167123901484707 M271 -H279 0.159545538956333 F256 -E280 0.152560619521042 M259 -F273 0.149574736948862 E248 -A253 0.14167547881447 N257 -D276 0.140446813539199 E248 -S278 0.135169681988595 A253 -T283 0.128753489446343 G250 -E280 0.127618607201224 C258 -M271 0.12317232989134 M271 -D276 0.121730876031209 A251 -R282 0.121340018082056 M259 -Q268 0.120233593145771 A253 -S275 0.111716437096056 M269 -S278 0.108720752136584 N255 -R282 0.10624506729649 R272 -E280 0.103107410298532 A251 -S275 0.0992580918966768 L252 -L274 0.0927575615433538 G250 -T283 0.0914568593447114 A253 -M260 0.0910524322007911 L274 -E280 0.0889067053795323 A251 -C258 0.0885962221236534 C258 -S278 0.0860318844569711 L252 -S278 0.0807579913570637 A253 -L274 0.0794578070822221 S275 -T283 0.0793614388679416 A251 -F273 0.0786425395469976 L252 -D276 0.074735898684354 I249 -H279 0.0722780550350111 S275 -R282 0.0712779826640317 C258 -S275 0.0709169049068716 I249 -V277 0.070698059128782 I249 -N257 0.0685419787273449 A251 -E280 0.0626013368410631 F256 -Q268 0.0624149728990187 I249 -R282 0.0615932022520782 A251 -S278 0.0613638532235479 E248 -T283 0.0561725468559819 M259 -L274 0.0542041202496542 G250 -H279 0.0535424570493817 A253 -H279 0.0487371471164662 E248 -L254 0.0473394480758911 F256 -M271 0.0470168945563001 G250 -L281 0.0465678671567367 A253 -R282 0.0420914999658351 M260 -M269 0.036742655220299 N255 -S278 0.0367191614196241 L254 -D261 0.034632479315136 G250 -C258 0.0329778656774522 N255 -T283 0.0321790296213464 Q268 -S278 0.0319167444625035 N257 -F273 0.0313187744086425 G250 -N257 0.029632411015998 L252 -T283 0.0272634269020084 M259 -M271 0.0252148968579786 A251 -M260 0.0245904402185637 L252 -N257 0.0238959516706032 D261 -Q270 0.0235744136147429 N255 -D261 0.0233318742468034 E248 -V277 0.0174794946079619 N257 -V277 0.0153112507757056 E248 -R282 0.0146825182205736 C258 -L274 0.0139166705395888 L254 -F273 0.0115664573576328 L254 -H279 0.00964474940732325 A251 -V277 0.00877969780815457 G250 -R282 0.00805435879840388 N257 -K262 0.00686010446685348 C258 -D276 0.00242709656836659 M271 -E280 0.00202287159868408 L252 -L281 0.00175608645684022 A253 -V277 0.00110421131589478 A253 -F273 -0.000593439824347453 M259 -S275 -0.000736425883354208 N257 -S275 -0.00249506329631033 A251 -M259 -0.00798558428080853 E248 -H279 -0.00948804773097267 C258 -H279 -0.010083290456375 A253 -L281 -0.0115673291306955 C258 -M269 -0.0179071219446207 I249 -T283 -0.0195938060811027 K262 -S275 -0.0198399978241595 A253 -E280 -0.0204559131376261 C258 -Q270 -0.0240147678729428 Q268 -D276 -0.0271021043940103 M259 -H279 -0.0275624326078359 F256 -H279 -0.0322181795270251 N255 -L274 -0.0328785896199562 D261 -M269 -0.0345576750373318 Q268 -V277 -0.0371350160486208 D276 -R282 -0.0422824605383294 A251 -L281 -0.0427914098046758 N255 -R272 -0.0468826704822884 N255 -L281 -0.0503656827363732 I249 -S278 -0.0546968666995915 Q270 -D276 -0.0573887402995834 E248 -E280 -0.0576231112242414 A251 -H279 -0.0598749781914734 C258 -V277 -0.0599466450785897 G250 -D276 -0.0608389236388116 L252 -F273 -0.0621691194759109 N255 -F273 -0.0626722735472121 M269 -V277 -0.0632766062057741 D261 -F273 -0.065874163366952 Q268 -S275 -0.066976960565855 N257 -E280 -0.0683379817663872 L252 -R272 -0.0712114456948387 L254 -S278 -0.0788138153059137 L252 -M259 -0.0795351027711693 K262 -Q270 -0.0839172105422872 R272 -S278 -0.0889613982337475 D261 -Q268 -0.0899630987607979 L274 -T283 -0.0903825110284284 K262 -L274 -0.0937414519622468 M260 -L274 -0.0948752027966722 I249 -L281 -0.0953444390005052 L252 -R282 -0.0955900952599764 L254 -T283 -0.0987450036342414 I249 -D276 -0.0991331497653622 M269 -D276 -0.0998750225362639 L254 -R272 -0.101798724202596 L254 -V277 -0.103792027064716 G250 -V277 -0.103806543461821 N255 -D276 -0.104975385826399 M260 -Q268 -0.106590127638911 F256 -M269 -0.106758076159744 E248 -D276 -0.10754522501684 L252 -E280 -0.10861748084548 A253 -S278 -0.114248434177087 D261 -R272 -0.118295687627075 D276 -T283 -0.121336325514783 F256 -R282 -0.122660692994917 L274 -R282 -0.123272175639496 M260 -V277 -0.123315695861735 L254 -S275 -0.123561619152639 N255 -V277 -0.123999407983692 F273 -R282 -0.124837930222266 F256 -T283 -0.126345315295235 M259 -R272 -0.126817755984255 Q270 -S275 -0.126863048324053 G250 -F256 -0.13222880558549 S275 -E280 -0.13460317122562 M259 -V277 -0.136101726066777 I249 -F256 -0.136854570538843 N255 -M260 -0.142917364638525 S278 -T283 -0.144661289978869 F256 -S278 -0.145636813221117 K262 -M271 -0.146740468549716 L252 -H279 -0.147276046624641 F256 -L281 -0.150123706476324 F256 -S275 -0.150241840582247 I249 -N255 -0.15227569336338 M260 -D276 -0.154156506750434 M271 -S278 -0.154298560309867 F273 -L281 -0.158268108879691 R272 -L281 -0.158875978521115 L254 -L281 -0.159840258539237 F273 -H279 -0.161145325740934 N257 -H279 -0.166913601877576 N255 -Q270 -0.167026802569378 N257 -Q270 -0.170237780487718 Q270 -V277 -0.170874999437126 C258 -Q268 -0.171232500462536 A253 -D261 -0.171238043470354 F256 -K262 -0.175438108327355 K262 -F273 -0.177329512042709 K262 -Q268 -0.17896716669908 L254 -M259 -0.179910753592409 F256 -L274 -0.181360322082771 F256 -R272 -0.185048321494104 N255 -M271 -0.185093575857702 G250 -N255 -0.185760730628791 M259 -E280 -0.187386331911426 M269 -S275 -0.191150640767471 N257 -L274 -0.194109844970799 L274 -L281 -0.197818027113348 A251 -N257 -0.199619515664869 L254 -E280 -0.2020901646822 M259 -D276 -0.203219658017503 E248 -L281 -0.204116890185639 M260 -F273 -0.209018397941958 A253 -M259 -0.209389730576331 F256 -D261 -0.210772029015366 N255 -K262 -0.211961517425745 V277 -T283 -0.213483538776799 L252 -V277 -0.21370776631472 L254 -D276 -0.216988062006074 A251 -T283 -0.220667374628589 N255 -E280 -0.227630803177474 I249 -E280 -0.231889214968587 L254 -K262 -0.232765364062749 Q268 -F273 -0.241556731711581 E248 -N255 -0.243631783086848 N255 -H279 -0.248274086808399 R272 -H279 -0.251663940286685 M259 -M269 -0.255173045971427 F273 -S278 -0.272286801158358 M259 -Q270 -0.28428513832933 M260 -M271 -0.293143563126981 S275 -L281 -0.335074980890527 A253 -C258 -0.336184168168755 M271 -V277 -0.346012662617165 I249 -L254 -0.380856966917785 M269 -L274 -0.402068473110258 L274 -H279 -0.419053434438579 L252 -C258 -0.424847708556404 L254 -M260 -0.444246969206202 A251 -F256 -0.450202646667958 F273 -E280 -0.469385266187067 Q270 -H279 -0.491081924695902 Q268 -L274 -0.501144274587941 C258 -F273 -0.597213166915431 C258 -R272 -0.608336140519365