[Mon Aug 29 17:34:20 2016] >Input file: TMA0A088USN4M1G.pdb >TM segments: 531-545_ 551-559_ 571-602 MAIDEN score = -0.6699 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I583 -V596 2.11677959075925 I584 -E592 1.06278081200995 I584 -V596 1.01206799506397 L572 -L577 0.921268182777352 I583 -V597 0.742304613791445 D587 -E592 0.660173889122339 F585 -I593 0.650515091206426 M537 -A601 0.612001548968267 M537 -F542 0.587821721490091 F542 -A602 0.530150624417636 E536 -P580 0.493982506192053 E538 -P581 0.464326095055703 K535 -Q600 0.448379084944681 F585 -G594 0.433141481779706 I584 -G594 0.419542754768637 T541 -Q600 0.418789509533129 L540 -A602 0.39965245196343 S533 -G598 0.392696366267137 C531 -P580 0.389611002813237 T541 -A602 0.385272254172529 C534 -P581 0.382200517364382 C534 -Y599 0.380576479126822 C531 -P581 0.376030287505326 C531 -G598 0.360985799932277 G582 -V597 0.360135564007437 G579 -Y599 0.350902559727041 L540 -A601 0.344994737105139 L572 -F578 0.341084130488854 C534 -T543 0.337332949513546 L577 -G582 0.330724569143013 M537 -Y599 0.330497269209616 C531 -H539 0.315771968189628 A559 -K573 0.310876878868684 F586 -I593 0.305586214892993 E536 -Y599 0.299176862319355 H539 -S545 0.293639799555408 P581 -V596 0.292656775826245 S533 -G579 0.292498100580187 I584 -R595 0.273683510265607 D587 -G594 0.272261924077225 F585 -R595 0.270905076147882 H555 -D587 0.26755802201246 K535 -P580 0.260428421870621 M537 -R558 0.253783825143505 F585 -N591 0.253273893697399 K535 -P581 0.242201938434838 T543 -Q600 0.241067356021563 C534 -P580 0.240769987745823 G582 -R595 0.239854624292762 M537 -Q600 0.229618417111396 I584 -I593 0.220613295392184 L571 -P580 0.219612182160145 T541 -L551 0.218724263827384 V557 -D587 0.216044316407878 S533 -V596 0.212417005055477 L577 -V597 0.208988981200466 C531 -E536 0.204872167188478 M537 -T543 0.204636349972478 K535 -L540 0.184670230486204 N576 -P581 0.184356542770248 A559 -I584 0.182721133476563 P580 -V597 0.182439981113925 L554 -R588 0.179401756819633 L554 -N589 0.17359416168881 H539 -D544 0.168799076150018 P580 -Q600 0.166445444810069 P581 -G594 0.160091422399511 H539 -Y599 0.158018023793782 A559 -F575 0.157873987089729 V596 -A602 0.152185174504417 L572 -P581 0.150753827291363 E538 -T543 0.150699407182758 R574 -R595 0.145073189348699 N576 -R595 0.143358216895224 E538 -Q600 0.141324713273169 H555 -G590 0.140649504339322 L551 -L556 0.140402636355736 K535 -G598 0.140394457272199 T541 -P581 0.140273832039433 G579 -V596 0.137626083772332 V557 -V596 0.136679858908549 E536 -A601 0.134111228414327 F578 -G598 0.133021829463082 R558 -F586 0.132915869589457 R558 -I584 0.132107497488196 P580 -R595 0.131827423004604 R574 -G579 0.127898903039519 E536 -T541 0.127279681443846 G582 -E592 0.126841776773151 C534 -Q600 0.125372647999168 T541 -G598 0.124936966100054 E536 -G582 0.123919804924736 A559 -P580 0.123813611889116 V532 -V597 0.123676335311351 A552 -V557 0.123437944248252 C531 -F578 0.121942784030614 I584 -Y599 0.120896999112426 E538 -I583 0.120619194674663 E538 -G598 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