[Fri Aug 26 17:39:14 2016] >Input file: TMA0A094TI96M1D.pdb >TM segments: 572-605_ 608-625 MAIDEN score = 1.1858 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L612 -V617 1.12865357220314 L603 -I608 1.0314678011018 V585 -L620 0.972417968405509 F584 -V618 0.909502561955678 A611 -D616 0.882784505145209 F584 -V617 0.792961728325401 D586 -A619 0.775461926369644 F584 -L620 0.690745593478792 V585 -G622 0.682002210366274 V587 -W624 0.679640124644505 L612 -A619 0.643279284531306 L577 -V583 0.631188147416966 V602 -I608 0.622190733313717 D586 -C595 0.593664370838134 V583 -V618 0.550872493841099 V583 -V617 0.542061229139076 W591 -K596 0.514644191451743 K581 -P615 0.502879358445459 L612 -V618 0.479231180474848 T588 -W624 0.462504053208054 A589 -T625 0.447811158933515 A597 -V602 0.447754051216124 S613 -V618 0.442715006374505 D590 -C595 0.410275665688505 A611 -V617 0.405610510960812 L604 -Q609 0.387350095946528 N580 -P615 0.346023588578898 L577 -R582 0.342128227660666 A572 -A578 0.330082698439076 D586 -V618 0.326411897311791 K581 -A611 0.307262399471593 I573 -L620 0.301464775498562 V583 -L620 0.280103605399288 V583 -D616 0.276602269577236 A572 -R621 0.260287271826839 A576 -R621 0.252573439399272 S613 -A619 0.24758750691975 I573 -R621 0.230571635658881 F584 -Q609 0.22523915337448 N580 -V618 0.224431979490568 H574 -G622 0.220105209971947 A578 -F584 0.219244219368073 N580 -V617 0.217712575597188 V583 -L612 0.209144989943981 L577 -V585 0.206942519976336 K599 -R621 0.206558185249485 L577 -P615 0.203101883324203 Y600 -R605 0.20159132160304 L603 -Q609 0.201190574252959 V587 -G622 0.199876851294883 K596 -W624 0.196963838487429 Q609 -P615 0.193104483817759 K596 -D623 0.190067463960669 T588 -T594 0.189623899416688 K581 -V618 0.187352476627722 D590 -A597 0.18694780061155 L604 -S613 0.178047317309149 A576 -R582 0.171769092159219 N598 -L604 0.169957429669754 D586 -G622 0.1671599592946 D586 -T594 0.167050690859724 A589 -A597 0.162394783124801 A576 -V617 0.157853629256549 D586 -N601 0.153563514960951 T594 -T625 0.153501552519552 A576 -F584 0.152288284319745 N598 -D623 0.15135806108071 A589 -C595 0.147196884715513 F584 -A619 0.146564330544532 K581 -L620 0.145962939179949 R582 -A611 0.145292877483311 L577 -G622 0.144221226749655 H574 -A619 0.144114732344119 D586 -T625 0.143172728753847 A597 -R605 0.139585313358538 R582 -A614 0.136810496824202 D586 -N598 0.135409985447252 N598 -I608 0.13519120805752 F584 -A611 0.134883864725276 R582 -S613 0.132791987196396 C592 -G622 0.132124632460194 A572 -A619 0.131461611608216 R582 -D616 0.126049188257754 V585 -L612 0.120495908446175 N598 -L603 0.120273043472731 S613 -L620 0.115387778330338 H574 -V618 0.113437739594179 V583 -G622 0.113287589040558 R605 -S613 0.113180403728646 A572 -V585 0.112906060313227 N580 -L612 0.111526848204527 L577 -V617 0.110706999151499 I573 -V585 0.109374199629674 Y600 -Q609 0.109300639268511 T588 -R621 0.107355715729843 V602 -A619 0.106143919386424 K599 -D623 0.104691707831046 L603 -S613 0.104451555130712 V602 -L612 0.103239982193143 T588 -A597 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