[Fri Aug 26 17:49:16 2016] >Input file: TMA0A0B1T395M2D.pdb >TM segments: 285-313 MAIDEN score = -4.8924 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- C304 -C311 0.386877924690163 W287 -N292 0.313468949236622 L298 -T305 0.23128350197203 W287 -T293 0.190827912609004 S303 -Y310 0.175657724258392 L291 -T296 0.155910191945239 N292 -Y300 0.136293958894393 T293 -I301 0.130268354021474 Y300 -N306 0.129253075788514 L298 -C304 0.117455832061697 L297 -S303 0.113613515602327 N292 -L297 0.101454760329495 S302 -T309 0.100679695017754 N288 -T296 0.0980788583125376 Y300 -P307 0.0954571353435072 I295 -S302 0.0927548755900216 S289 -I295 0.091822263037685 S303 -C311 0.0850064695736961 I301 -P307 0.0831430381849263 I301 -I308 0.0826809664502628 F294 -S302 0.082603095660752 S289 -T296 0.0816753472103278 I301 -T309 0.0684820657595822 D290 -L298 0.0482646459788474 S285 -L291 0.0430189470549873 T296 -S303 0.0411412754907952 N288 -F294 0.0396487999678344 D290 -I295 0.0358168565038 L291 -L298 0.0330813499096241 L291 -T299 0.032125803887068 S289 -L297 0.026989778037493 P307 -F312 0.026092163154984 S302 -Y310 0.0231393323544999 D290 -T299 0.0191541119316545 F294 -I301 0.0189594304891315 S289 -F294 0.00913481844827735 S285 -D290 0.00853264579828805 I301 -N306 0.00654533388216283 W287 -F294 -0.00217437637939133 C304 -F312 -0.00344675595574584 N306 -C311 -0.00456544258360936 S289 -L298 -0.0151728058094083 S285 -N292 -0.0177626700514897 S303 -T309 -0.0318399578002134 T296 -C304 -0.0443986806655157 T305 -L313 -0.0459566049691329 T305 -Y310 -0.0660220265167522 W287 -T296 -0.0669541447092898 Y300 -I308 -0.067182283252171 W287 -I295 -0.0704646856744553 N288 -T293 -0.0731391982591707 N288 -I295 -0.0737208769697269 V286 -N292 -0.0770186331075857 N306 -F312 -0.0782425459693208 T293 -Y300 -0.0788705210910767 I295 -S303 -0.0821337126931833 L297 -T305 -0.0865459184215034 T299 -N306 -0.0948070285650873 Y300 -T305 -0.0950309025383181 T296 -I301 -0.0959013872087855 L298 -N306 -0.0978724217657589 T299 -T305 -0.105482720898411 L297 -C304 -0.125736872477498 T305 -F312 -0.139510458198014 N306 -L313 -0.144193084048432 S302 -I308 -0.150739126842348 D290 -T296 -0.155583492056319 F294 -Y300 -0.160324309592344 V286 -L291 -0.163750576789154 I308 -L313 -0.165162217082612 L291 -L297 -0.18102139792685 L298 -S303 -0.188591799432695 N292 -T299 -0.19447751612223 T296 -S302 -0.22028804021458 I295 -Y300 -0.222978593507567 S303 -I308 -0.225334607630165 T293 -L298 -0.233342935858872 N292 -L298 -0.254446890945059 C304 -Y310 -0.264272302064508 F294 -T299 -0.273078569003201 C304 -T309 -0.298644625236746 D290 -L297 -0.30075164930363 I295 -I301 -0.313103820591587 L297 -S302 -0.322167785752514 S302 -P307 -0.335149656515487 T293 -T299 -0.371295006248348 P307 -L313 -0.453645081676513 T299 -C304 -0.558248996393664 T305 -C311 -0.558277630091184