[Mon Aug 29 17:45:31 2016] >Input file: TMA0A0B1T9W8M1G.pdb >TM segments: 46-72_ 95-112_ 124-139_ 152-163_ 227-245 MAIDEN score = -18.1060 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L101 -I106 1.07445965975819 Q96 -L101 1.02834825938934 V99 -L104 0.725479474365011 V127 -K228 0.6820912054829 Y98 -L103 0.66359479274915 N130 -K228 0.541497486542632 F240 -L245 0.52080620507842 A239 -W244 0.465132967591483 T100 -F105 0.46120063648976 K227 -M232 0.44974385755607 A125 -R231 0.422675307341485 F72 -Y95 0.377310020917768 T100 -C109 0.363084042878314 V127 -K227 0.353096342991517 C109 -F240 0.3525576606684 N130 -R231 0.339923909646357 P131 -K228 0.338587060922755 T235 -C243 0.329293253268625 T124 -R231 0.326304374151388 M56 -V102 0.297019161191216 P131 -K227 0.293813625398629 C64 -L103 0.286261474839894 V63 -V99 0.279525249896587 C64 -V99 0.264267570803839 V102 -P107 0.261142435479484 K228 -L233 0.255974618359565 Y98 -P107 0.250045751885965 V112 -V237 0.24409139713686 L51 -M56 0.243855422319132 C109 -V238 0.231216592697736 S132 -K227 0.222288988792294 F66 -Y98 0.22147715281473 V127 -R231 0.215674846701199 V126 -V229 0.21495592140563 V63 -V102 0.21236797665709 V63 -F70 0.209420846134769 L233 -V238 0.207911863350053 I236 -W244 0.207320655384651 F60 -L103 0.195579138058285 M56 -F62 0.190550467098411 V112 -M232 0.189994943568404 C64 -L97 0.181989259440017 N65 -Y95 0.176242167288901 C64 -I71 0.175996922369875 M56 -L103 0.174973324673743 S61 -P107 0.174717180271402 S68 -Y98 0.173478605912786 S61 -Y98 0.172140776626759 G67 -L103 0.166404646017927 V57 -V102 0.162469286465672 N65 -I71 0.157480617633421 R231 -V238 0.156542650559593 V126 -K228 0.155209204694124 Q96 -L103 0.1486144660909 Q96 -F105 0.147267223215834 W58 -V63 0.146059814298763 G67 -L97 0.144389552814387 P131 -R231 0.14141498966287 A125 -M232 0.139774781718494 V57 -V99 0.137758423952716 V229 -V238 0.137738392676843 R231 -A239 0.135286869200982 V102 -M111 0.135209945139237 V237 -L245 0.129488526320762 L108 -L233 0.12880914570791 T100 -P107 0.123776698309634 D129 -V229 0.12272191578173 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-K227 0.0896297868785508 V63 -I71 0.0894183180553521 S55 -C64 0.0887183432400798 C109 -A241 0.0824742045522837 T124 -K228 0.0824055959951848 A125 -L234 0.0823648416486877 I106 -V112 0.0821419427562144 V57 -L104 0.0815077097971222 T100 -W244 0.079129322783059 A110 -L234 0.0769972554151113 R49 -V57 0.0765317155355532 V126 -T235 0.0741353192600522 V63 -P107 0.0719879137569031 L103 -W244 0.0715239697565639 L108 -A239 0.0710728456970671 A110 -I236 0.0702001776403547 M111 -M232 0.0699405736288682 F62 -T100 0.068190927036099 M111 -A241 0.0674115965466311 V127 -L234 0.0674072252859919 S128 -R231 0.0669295702265187 T100 -L108 0.065714798926555 S68 -Q96 0.0645974452899285 P107 -L233 0.0645706530667765 Y95 -V102 0.0633610821833841 M111 -T235 0.0631960777052166 V102 -V112 0.0617883092888043 I236 -L245 0.0612147882784009 M111 -L234 0.0608794745750303 F60 -Y98 0.060748459267348 M56 -N65 0.0595783475262648 V57 -N65 0.0590237141221874 V127 -T230 0.0572326765968985 F62 -Y98 0.0566996329220606 V63 -L104 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