[Mon Aug 29 17:53:38 2016] >Input file: TMA0A0C4DFM1M1G.pdb >TM segments: 183-189_ 239-248 MAIDEN score = 12.3098 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V187 -I244 10 V188 -I244 1.36012578099109 Y185 -A247 0.762769257223459 R189 -S242 0.526760159481692 Y185 -I244 0.520507850697363 T184 -A247 0.475241965998304 V188 -S242 0.460586871131914 R189 -I244 0.4530501019892 H183 -A247 0.328726685678873 V187 -W246 0.323023531762102 T184 -W246 0.285997334662289 V188 -W246 0.269471683034392 V188 -D243 0.193072408470364 V187 -K245 0.131047465320339 V188 -E241 0.130952778933523 R186 -I244 0.126497682164537 V187 -E241 0.113015307751355 R189 -K245 0.0919063642280271 V187 -S248 0.0853760732762612 V187 -S242 0.0849075385943814 R189 -D243 0.0760376342860509 R186 -E241 0.0621937051935646 H183 -W246 0.061086470241175 R186 -K245 0.0544042246210359 R189 -W246 0.0461395014312815 Y185 -S242 0.0334848068582878 H183 -I244 0.0311403556623981 V187 -E240 0.0168327742325283 Y185 -E241 -0.00751008707754952 R189 -E241 -0.0207871129411014 V188 -S248 -0.0534774457678506 Y185 -K245 -0.0643429030917293 T184 -S248 -0.0649102597055735 H183 -K245 -0.0746815660589979 R186 -S242 -0.0761089376689583 R186 -S248 -0.0884832273070947 R189 -E240 -0.0974078944994221 R189 -A247 -0.103823782106384 V188 -E240 -0.114787743548117 T184 -D243 -0.117254858492567 Y185 -D243 -0.131890945554598 T184 -K245 -0.140228249187619 V188 -K245 -0.14284726523561 R186 -D243 -0.167466502457705 R186 -W246 -0.209865326614542 V187 -D243 -0.260084833950518 V187 -A247 -0.275521065467842 R186 -A247 -0.33089508767815 V188 -A247 -0.336960998462614 T184 -I244 -0.366060206406386 H183 -S248 -0.382905118459592 Y185 -S248 -0.419360078373296 Y185 -W246 -0.746890299748271