[Fri Aug 26 18:11:53 2016] >Input file: TMA0A0D6HIM7M1D.pdb >TM segments: 107-129 MAIDEN score = -6.5364 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I116 -V121 0.943104117105885 L114 -L119 0.577399690707271 T117 -A122 0.470784477807451 L114 -R120 0.432100063721701 R109 -L114 0.319354351727362 V113 -P118 0.305290760453136 L110 -T117 0.234793572508961 L110 -P118 0.183204129799782 V113 -A122 0.162274039304696 V111 -V121 0.137158662216168 R120 -I125 0.102431348340155 L110 -L119 0.0949700073083162 P118 -F123 0.0913426177491607 V115 -L124 0.0821002124714147 S107 -V115 0.0780601971538184 V111 -R120 0.0766863640790243 P118 -V126 0.0597366371803616 R109 -T117 0.0596040376478265 L114 -L124 0.0524494813294991 A122 -L127 0.0438578467723012 R109 -P118 0.0359797497215957 V113 -V121 0.00135904921860663 T117 -V126 -0.000539520750449718 L119 -G129 -0.000967726708225758 T117 -L127 -0.00744486350540363 V111 -L119 -0.00818141516230142 A108 -T117 -0.0143667376050414 R120 -I128 -0.0179115493733373 N112 -V121 -0.0229317528151789 L119 -I125 -0.030199292924213 L114 -F123 -0.0311952995208911 I116 -V126 -0.033538008930293 N112 -P118 -0.0342770891454478 N112 -A122 -0.0395358155601582 A108 -I116 -0.0522601335985335 L110 -R120 -0.0594336438787696 L119 -L127 -0.0602533743351668 N112 -T117 -0.062973739201863 V113 -L119 -0.0766944522648352 I116 -L124 -0.0774759209820626 P118 -L127 -0.0812166907950815 V113 -F123 -0.0846103381125385 S107 -I116 -0.0854988971526676 A122 -G129 -0.0916148482944092 R120 -L127 -0.0929273443511667 V115 -I125 -0.0995769815650438 F123 -I128 -0.101126301283965 R120 -G129 -0.102827160503913 L119 -I128 -0.104127252913576 F123 -G129 -0.106271950289517 N112 -R120 -0.109879681611097 V121 -G129 -0.121099135899525 S107 -N112 -0.121980197140009 V121 -I128 -0.132148639614305 V115 -A122 -0.142111469866376 A108 -V115 -0.144003824162357 R109 -V115 -0.152902252140791 R120 -V126 -0.15469081945625 V113 -R120 -0.163544367054803 V115 -R120 -0.166316750115194 L114 -V121 -0.172600332250691 S107 -L114 -0.17492681351195 R109 -I116 -0.196741364983922 V115 -V121 -0.204001953221004 L114 -A122 -0.209543123175687 V111 -P118 -0.211531529962319 I116 -F123 -0.211762488427164 T117 -I125 -0.2121047645314 L124 -G129 -0.213474149186055 V115 -F123 -0.215740240832262 V121 -V126 -0.221844912054472 I116 -I125 -0.228419703618913 V111 -T117 -0.24030034101609 N112 -L119 -0.240660187417041 L110 -V115 -0.255109477462138 P118 -I125 -0.257447633322013 T117 -L124 -0.270159967886651 L110 -I116 -0.288119221904349 I116 -A122 -0.291458942198933 T117 -F123 -0.298554095165592 A108 -L114 -0.308880479806992 L119 -V126 -0.323848757564003 V121 -L127 -0.330046486428285 A122 -I128 -0.343803224876067 S107 -V113 -0.355029922411505 V111 -I116 -0.378716343544831 L119 -L124 -0.405157887721606 A108 -V113 -0.462700708223506 P118 -L124 -0.569135330966753