[Fri Aug 26 16:26:00 2016] >Input file: TMA0A0D6LGG2M2D.pdb >TM segments: 86-114_ 123-141 MAIDEN score = -20.7118 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I136 -L141 1.15566685730081 F98 -I137 1.09579900406475 V112 -D123 0.995187563502751 F102 -L134 0.6931522994083 Y94 -L141 0.645522918586392 V106 -L134 0.560632633629954 F102 -D133 0.499597800270736 N105 -A130 0.438399185317596 F98 -L141 0.42343060856122 F102 -I137 0.412929585541933 D133 -C140 0.408272387188495 F98 -I138 0.391592728462371 I126 -M131 0.383753758012353 L103 -V108 0.378613825266116 F102 -I138 0.37584420734707 F93 -C140 0.358569485602612 V97 -M131 0.336433635386711 V97 -L141 0.327588530466293 V106 -A130 0.317846307628109 V97 -I137 0.302298634689331 V108 -S127 0.297908525810442 G101 -L134 0.288580260164914 G104 -S127 0.288046861711878 L135 -C140 0.264390482213394 G96 -G104 0.25987478893823 V112 -Y124 0.243808476720085 V106 -M131 0.240644092591369 V108 -D133 0.232540187582062 V113 -I126 0.218020381414105 N105 -L129 0.21441659889674 V106 -S128 0.210458416874369 G101 -V106 0.206379569572977 V109 -L134 0.199742962610433 V113 -S128 0.180261006231439 V108 -L129 0.17936777751467 M131 -L141 0.174446917383277 D123 -A130 0.171203261790574 V106 -I138 0.170353205357063 G96 -L103 0.165798486880565 S114 -Y124 0.165147051954577 A111 -I126 0.164441569402072 V97 -F102 0.158123236962571 A111 -D123 0.155711473423369 N105 -L134 0.151643769098627 V112 -S127 0.150421589788984 V109 -M131 0.14781699897611 L103 -V109 0.146150287778731 Y94 -L99 0.144938166096903 N105 -I138 0.14160347488439 V97 -V106 0.140558889195526 D133 -I138 0.137491688438603 Q90 -F98 0.134398292006284 G101 -I137 0.133558047674456 N105 -I137 0.132011250493162 L110 -S127 0.130550705676756 L134 -F139 0.130508139424443 A111 -S128 0.12997172944524 L99 -C140 0.129774816229309 F93 -G101 0.124360219928282 L99 -V106 0.121258529441989 Y94 -G104 0.121003521055501 G104 -I136 0.120747448566815 S114 -A130 0.118655155619832 G104 -L135 0.116628916101593 G95 -I136 0.111888907677402 N105 -L125 0.111436897462095 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