[Fri Aug 26 16:32:07 2016] >Input file: TMA0A0D6M8X2M2D.pdb >TM segments: 380-404 MAIDEN score = -2.6411 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P397 -R402 0.48205724659222 W387 -M394 0.38848928932841 M394 -R402 0.270199030588656 S393 -S401 0.227491562243715 I399 -S404 0.202402249096401 L391 -N396 0.192395498183343 G389 -N396 0.182945548601261 S393 -Y400 0.176185175390883 A388 -M394 0.144432680575294 N396 -S404 0.137950216733853 T380 -W387 0.122133140899101 A388 -L395 0.114555844278066 W387 -S393 0.111323195474704 L391 -P397 0.110437859036347 I381 -A388 0.0962468597686357 F382 -W387 0.0905374043258904 T383 -H390 0.0784302811337361 V385 -N392 0.0740322649194645 L391 -L398 0.070635488411237 A388 -N396 0.0512217701061042 N392 -Y400 0.0455104847148722 I384 -G389 0.04364390887139 M394 -I399 0.0397925561023751 N396 -F403 0.0393573617897702 F382 -H390 0.039277442370391 T386 -L391 0.0292350726274559 M394 -S401 0.0284140465868273 I381 -G389 0.0251771397627807 T380 -V385 0.0242082763268421 N392 -I399 0.0104083397213806 W387 -N392 0.000817692961202265 T380 -G389 -0.000504108386166546 V385 -H390 -0.0154171443754014 S393 -I399 -0.0170393058469651 T383 -L391 -0.0218534345446741 W387 -L395 -0.0229352051884097 T386 -S393 -0.0319027649875268 V385 -S393 -0.0333835608958459 H390 -L398 -0.0371338823848126 G389 -L395 -0.0438645212426234 M394 -Y400 -0.0463373864287986 P397 -S404 -0.0490804747689115 T380 -A388 -0.063846569354912 L395 -F403 -0.0656257435152678 T386 -M394 -0.0660555516705053 N392 -P397 -0.0682438986174878 F382 -A388 -0.0698095923281361 I384 -N392 -0.0745672761842523 I384 -L391 -0.0890877768093455 H390 -N396 -0.0937922031636367 L391 -I399 -0.0964552556592642 H390 -L395 -0.105704742122031 L395 -Y400 -0.106713186525504 T380 -T386 -0.119237180271612 N392 -L398 -0.128907188461887 N396 -S401 -0.129042314611907 L395 -S404 -0.130405775027153 T386 -N392 -0.130957739135009 I381 -T386 -0.139785142323428 T383 -N392 -0.142825763987648 L391 -Y400 -0.147372899227963 L395 -R402 -0.15067620374633 F382 -G389 -0.163862585275362 V385 -L391 -0.171782167825151 G389 -M394 -0.179552252589839 N396 -R402 -0.181277510093964 A388 -S393 -0.197135163869595 L395 -S401 -0.205158600873974 T383 -A388 -0.2179857780819 L398 -S404 -0.219825059627987 T383 -G389 -0.234389801425921 P397 -F403 -0.254652943964642 S393 -L398 -0.289442574665252 H390 -P397 -0.305810392792106 I381 -W387 -0.332913746105973 L398 -F403 -0.37598453897088 I384 -H390 -0.522756109491251