[Fri Aug 26 16:40:30 2016] >Input file: TMA0A0D8XZ10M2D.pdb >TM segments: 242-266 MAIDEN score = -6.6116 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I246 -S251 0.251963826282378 T254 -L261 0.207716074128768 I246 -T254 0.205547695404177 L261 -N266 0.190656619907918 M242 -S251 0.178456876120961 M245 -I250 0.175752202555014 V243 -I250 0.171926872599272 T254 -P259 0.14918163639558 V243 -H248 0.101542143904692 A247 -T254 0.0956059790376118 T253 -Y262 0.0922813854921021 V256 -Y262 0.0846656135870293 T253 -L261 0.0687947744748146 V243 -F249 0.0668027266822993 A247 -A257 0.0650664176807454 N258 -N266 0.0615212521496168 V243 -S251 0.0593969551087192 M252 -N258 0.0489155810583437 F249 -N255 0.0389012646824054 F249 -A257 0.0373625634098476 M245 -M252 0.0361937795088159 S251 -N258 0.0196166690588191 H248 -T254 0.0106378901839763 V256 -A263 0.00734815580437798 N258 -W264 -0.00360758794000171 M252 -P259 -0.00384321841450785 N255 -Y262 -0.00618058985946668 M242 -A247 -0.00957133655379039 T254 -Y262 -0.012233596861787 M245 -T253 -0.0181854492942225 S251 -I260 -0.0344309735800212 N255 -A263 -0.0360499480657523 I260 -L265 -0.0382504161172559 A257 -N266 -0.0465995189574988 M252 -I260 -0.0479523820931966 M242 -I250 -0.052696176633507 A247 -N255 -0.0551895521489127 T253 -N258 -0.0631410579780693 N255 -L261 -0.0671130685580434 A257 -L265 -0.077261480807608 F249 -V256 -0.0786752969239357 S244 -S251 -0.0797076070478919 T253 -P259 -0.0823352497706379 V256 -W264 -0.0969380550866257 I250 -A257 -0.103435399818132 I250 -N258 -0.110226453439626 A257 -W264 -0.11522558130204 H248 -T253 -0.116359296564311 I246 -T253 -0.12993506468194 I250 -I260 -0.133831097317541 N258 -L265 -0.135501863279985 H248 -N255 -0.147431811921502 A247 -T253 -0.163984545424486 N258 -A263 -0.173367959097197 S244 -M252 -0.17668856117943 M245 -S251 -0.192532452798689 I250 -V256 -0.199794261533221 M252 -A257 -0.20339706351783 M242 -H248 -0.206639871024367 S251 -A257 -0.208672532000123 T253 -I260 -0.215857715295527 T254 -I260 -0.221164562066642 F249 -T254 -0.22701221297369 M242 -F249 -0.239079063366027 H248 -V256 -0.244493384542808 A257 -A263 -0.244586997604366 S244 -I250 -0.245054465319522 S244 -F249 -0.259075985284628 I260 -N266 -0.271374624594838 A257 -Y262 -0.272965074926908 N255 -I260 -0.300688810470215 A247 -M252 -0.316703850992363 I246 -M252 -0.316808430584461 V256 -L261 -0.337360050000008 I250 -N255 -0.338576745412377 S251 -V256 -0.343365097664592 P259 -N266 -0.347633552266106 P259 -W264 -0.392312312243794 P259 -L265 -0.476377588897617