[Fri Aug 26 17:03:13 2016] >Input file: TMA0A0F6BM57M1D.pdb >TM segments: 347-356_ 361-367_ 387-436 MAIDEN score = 40.3957 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L417 -I423 10 F419 -A424 10 L418 -I423 10 L418 -I427 10 V390 -R398 1.12148114525493 F419 -I427 1.05426083450686 L417 -E425 0.944225623431484 L418 -N426 0.885432773615165 L417 -N426 0.881331206274831 L417 -I427 0.865952369754924 I400 -L405 0.837590457346044 I392 -V397 0.778611272134067 R389 -V397 0.692884700609111 S420 -I427 0.688112259099619 L417 -A424 0.661065253711921 F419 -N426 0.633861362220354 L418 -A424 0.622458504990453 I392 -R406 0.57219181911126 A424 -F429 0.551336665159356 F419 -E425 0.540885039906017 V390 -V397 0.525133230997223 V397 -L405 0.486303535071254 M391 -V397 0.472969881869314 F419 -R428 0.464436766171537 L418 -R428 0.44569516364754 R398 -L405 0.404988048294004 I392 -A407 0.397958997680069 E403 -G430 0.344472931122779 L417 -T422 0.309971657444593 Q402 -I409 0.299445394781245 M391 -Q404 0.275448417925784 R421 -I427 0.270597756198439 L347 -G366 0.269988178598643 F411 -G430 0.258591222192954 I392 -L405 0.255246898869826 V397 -Q404 0.232532832299477 D351 -A387 0.232223687952852 D351 -G388 0.217433151680823 H399 -Q404 0.216909182979635 R389 -H399 0.213437777917744 V348 -F354 0.208968691004542 D351 -R389 0.20795678419463 M391 -R406 0.207887070189084 G388 -V397 0.203643679298802 K401 -R410 0.201460119585157 V416 -R428 0.200489350200885 R389 -Q402 0.199847673338764 K401 -R406 0.198479524257438 R406 -N431 0.195987824646997 R410 -N431 0.192047769026904 R389 -D396 0.184354805394898 E403 -I409 0.181680277650202 V395 -L405 0.179492735783317 S420 -R428 0.177438601987985 G388 -D396 0.177373788747514 R421 -M436 0.176986283106182 D351 -R398 0.17603060487246 L347 -S353 0.173628507906328 S420 -S435 0.171311370265044 G388 -R398 0.154740286992628 V355 -R389 0.147395744478617 K350 -R389 0.146410142649177 V416 -I423 0.146228433695093 E425 -E432 0.145903339430745 R398 -A407 0.141062021047086 F354 -G388 0.137827483976746 E403 -F408 0.134545678961326 A407 -V412 0.133891696557086 S353 -A387 0.133595744695062 F411 -F429 0.133444536479058 A424 -A434 0.133260538594034 V362 -V412 0.132116441727339 V397 -I409 0.123079406576352 V348 -A387 0.121800508871843 V395 -R406 0.121177546424538 F419 -G430 0.121003585550639 E425 -S435 0.120071911147645 F354 -A363 0.119433324781081 L347 -G388 0.114277171087434 V356 -V362 0.112513651291528 I392 -H399 0.111109688373086 I392 -I409 0.109347295094247 I392 -E403 0.10824970025307 F408 -G430 0.107887785171093 L417 -G430 0.107874498362055 V362 -A407 0.106199874409814 V355 -T361 0.104733175898228 I392 -R398 0.104107733242919 L347 -L365 0.102623153008965 V356 -V397 0.102476149965143 S420 -A434 0.102252835933527 L349 -G366 0.100516716071406 V355 -G388 0.0991321046683029 G430 -S435 0.0967642101437729 S353 -A363 0.0950841793629162 E425 -H433 0.0950439460840258 V356 -A407 0.0932466156602962 V355 -D396 0.0918736767568511 G394 -A407 0.0898886402001535 M391 -I409 0.0896944094848067 R398 -E403 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M391 -Q402 0.0487336420321896 E403 -H433 0.0461966413556325 D393 -H399 0.046138011898381 M391 -F408 0.0429314174644105 I400 -F408 0.0428169434117027 T422 -M436 0.0416603805571967 I427 -H433 0.0409204783581805 G394 -H399 0.0408402927557385 G388 -H399 0.0401529107809964 E403 -R410 0.0397570056728682 V348 -A363 0.0381105297836637 A387 -H399 0.0363515486537969 I364 -P413 0.0350115093218273 P413 -I427 0.0328829205112751 V355 -A407 0.0326879691045505 A363 -P413 0.0326574016671888 R398 -Q404 0.0315798350056142 V395 -A407 0.0307086910971606 A363 -F411 0.0290505786706436 Q402 -F408 0.0281031020086449 S353 -D396 0.0266143485008798 R421 -F429 0.0255264006827944 Q402 -G430 0.0251765008617131 D396 -Q402 0.0247924887156397 T361 -F411 0.0244410638193457 A387 -D396 0.0225202897229586 V348 -V390 0.0224447133597696 D393 -R406 0.0219617109197419 L349 -V390 0.0208620930748431 I400 -R410 0.0206001572337302 L349 -F354 0.0202568490531267 I392 -Q402 0.0169687414047601 V412 -I427 0.0166105288405569 E415 -F429 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