[Mon Aug 29 17:26:58 2016] >Input file: TMA0A0H3FUY9M1G.pdb >TM segments: 322-343 MAIDEN score = 0.3120 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V338 -D343 0.734056981138041 I336 -D343 0.712955489705024 L327 -R335 0.60054296956561 L327 -Q332 0.599421734264224 A326 -N331 0.597598135979662 L327 -H333 0.488375530622183 L327 -T334 0.355711170522476 R335 -D343 0.343755614454054 A326 -Q332 0.309197781169048 K330 -R335 0.299583081633157 E329 -T334 0.212558470085307 V324 -E329 0.212279997652266 E323 -K330 0.201111386542193 E323 -Q332 0.15109604549839 A326 -V337 0.129281786809068 E322 -N331 0.127533730050888 R335 -N342 0.123821349319535 R335 -G341 0.0969199728090846 R325 -T334 0.0961996620583643 L327 -V337 0.0845171778433955 V324 -V337 0.0778819093680596 E322 -L328 0.0653336703706806 E322 -H333 0.0444903371526999 E322 -Q332 0.0313242621680883 E322 -V337 0.0241069838262559 L328 -R335 0.0140743834678618 E323 -V338 0.00799695843309811 E322 -R335 0.000714970194079179 E323 -N331 -0.0120733036331058 E329 -R335 -0.0209245088810208 A326 -H333 -0.025467005983101 V324 -I336 -0.025811144337005 E323 -H333 -0.0281562841898526 E323 -L328 -0.0378263992995764 E322 -T334 -0.0499306963205957 Q332 -V337 -0.0513028181796369 E323 -R335 -0.0517080252254931 R325 -Q332 -0.068561498768692 T334 -D343 -0.0712287878240083 A326 -I336 -0.0792606555126527 E322 -V338 -0.0844431468081206 L327 -I336 -0.0881849264748671 R325 -R335 -0.0928292738448722 R325 -K330 -0.098516157633463 E322 -I336 -0.113954883075545 K330 -I336 -0.124149912168947 E323 -T334 -0.125032627787358 E322 -L327 -0.128423398336374 V337 -D343 -0.128672433994992 A326 -R335 -0.132471072726359 E323 -E329 -0.139900762880906 E323 -I336 -0.148622125058353 V324 -R335 -0.151166206976697 N331 -I336 -0.15463369163977 R325 -H333 -0.166540115286312 V324 -K330 -0.167046484383541 V324 -N331 -0.171964229462257 E322 -E329 -0.176547380587968 A326 -T334 -0.191696012099531 V324 -T334 -0.215466022451388 E322 -K330 -0.220875669445939 I336 -G341 -0.255597749541708 R325 -N331 -0.27845461406665 I336 -N342 -0.282937220999784 L328 -T334 -0.287044209266118 V337 -N342 -0.305428718294674 V324 -H333 -0.309729499058175 E323 -V337 -0.33168471873562 L328 -H333 -0.411062135668285 V324 -Q332 -0.42515711779296