[Mon Aug 29 17:32:57 2016] >Input file: TMA0A0H3L706M1G.pdb >TM segments: 419-470_ 512-525 MAIDEN score = -5.1146 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- C426 -T450 10 C426 -L451 4.25357225526983 I435 -L443 1.1874707230586 C426 -T446 1.03056495738073 L464 -H470 0.786779871391027 V424 -L429 0.757704102401851 V424 -V430 0.702150943200161 L422 -L451 0.676107018630447 V423 -V428 0.54139125497746 A434 -V439 0.514876048999903 V423 -L429 0.467478333324056 L464 -Q469 0.45012265343224 V432 -A437 0.437863797263297 T431 -L443 0.428188575145676 R425 -L451 0.421518771851617 L422 -A454 0.37701412361299 I435 -G441 0.368839760701005 A420 -A454 0.368123551630033 T427 -L443 0.367378201929574 I448 -T453 0.332119770495456 V423 -L451 0.316506967816153 S514 -A522 0.297986327596879 T446 -L451 0.296045946108431 S456 -G520 0.294097579019361 T431 -A436 0.292250151310887 S456 -A515 0.287258157230298 L517 -A522 0.278801755556193 C426 -A447 0.269531284966363 L422 -G455 0.269163053558044 V428 -L433 0.265873684613906 P419 -V424 0.263123848182278 L422 -T450 0.249827446219268 A437 -S442 0.246282052967413 T453 -L516 0.241749250484396 L422 -T446 0.241267811786062 K461 -H470 0.238282313949748 I435 -A440 0.231998077726261 V423 -I452 0.221721962235956 V421 -C426 0.21603719895033 T427 -L451 0.212490284586253 I435 -T450 0.206165831548552 I448 -G520 0.20476617515367 A458 -D465 0.20277772473275 I452 -T524 0.199130523639001 T446 -G455 0.192803441664423 T427 -A437 0.191867829910299 A436 -T446 0.187383207105994 A434 -T450 0.184725243497798 A440 -T446 0.181835047625904 I435 -A447 0.181738460963251 A420 -R425 0.171230913368204 T453 -A515 0.168760605324554 T427 -G455 0.165794937566086 V430 -A445 0.164010041988497 T427 -T450 0.163502288946756 V428 -A449 0.160537683945151 V430 -A438 0.160263982956021 V423 -A458 0.158676471890706 I452 -S457 0.158603851170209 A445 -G455 0.154878222879661 I435 -A445 0.15378596693782 T427 -V432 0.150006670626224 A447 -I452 0.149274188109742 V432 -L443 0.147345399561345 T431 -A440 0.145893094058215 A515 -Q523 0.145878888634113 P419 -L429 0.141898049150594 T431 -T453 0.141767955247925 C426 -S442 0.139910356288705 G455 -L519 0.139488169944572 C426 -S457 0.139208778721745 T427 -S442 0.137963114825071 A420 -T427 0.137726873238435 V430 -S442 0.137439821015773 V421 -V432 0.136375829832887 V430 -V439 0.134743935360707 R425 -A445 0.132275429619498 A447 -G455 0.129838264477674 T450 -G455 0.128625692835978 T431 -I452 0.12594363141853 S463 -A515 0.124891682016846 V513 -L521 0.122031052398036 V424 -A449 0.119716019423565 I452 -L521 0.119260767065022 P419 -V430 0.119122039324749 L422 -T431 0.11596391305021 S442 -A449 0.115353142697125 A436 -A444 0.114598983977538 L422 -A460 0.11408272178356 A445 -A454 0.113792354087775 A444 -G520 0.113609132758255 L429 -A454 0.113582930271861 S457 -A512 0.112278077253445 A458 -A466 0.112278015220062 V432 -A445 0.112093357888277 A454 -L516 0.111321547755408 S442 -T450 0.11114218726603 V430 -L451 0.109507957230906 V432 -T450 0.109343627136108 A440 -A445 0.109150942744851 R425 -T453 0.108891198443107 L429 -T450 0.107537468619128 S456 -L516 0.106909175489275 V430 -G441 0.106407473158572 A449 -A458 0.106340253517728 A454 -A462 0.105689473713271 V424 -T446 0.102269379931188 A449 -A454 0.10191808746136 A460 -A515 0.100141554460132 C426 -I435 0.0998894127423342 G455 -A462 0.0998050102389589 T453 -G520 0.0997517221735494 S514 -Q523 0.0982825814951793 T450 -A458 0.0974081257437542 V421 -S457 0.0971101850634768 V423 -L433 0.0957891715945403 V428 -T453 0.0954657026202828 V424 -A447 0.0952801519468855 L429 -I452 0.0938017842234385 L451 -L519 0.0911091093137157 C426 -A445 0.0889093009847639 G455 -G520 0.0874206207831838 V428 -L443 0.0866807345376444 I459 -L516 0.0856719068228445 C426 -A434 0.0831291369135625 C426 -S456 0.0810321980888666 L433 -A440 0.0802295209056574 V430 -A449 0.0799042779040673 A454 -G520 0.079597898852743 A434 -A444 0.078889234969489 P419 -A454 0.078151278163519 V424 -I448 0.0775456550499951 I435 -S442 0.0757800438058365 A420 -I452 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