[Mon Aug 29 17:33:07 2016] >Input file: TMA0A0H3L7N8M1G.pdb >TM segments: 622-628_ 668-675 MAIDEN score = 8.6861 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P623 -R674 10 A628 -S671 0.450228647478866 V626 -A670 0.444352493113635 S627 -L669 0.4374462760589 P623 -A672 0.427264267842479 A628 -L669 0.398298405930186 V626 -A672 0.299229382499313 V626 -L669 0.253915593511192 A628 -G673 0.241807366868288 A628 -A670 0.228550222771127 V626 -D668 0.223177769792361 V626 -S671 0.218691774843021 T625 -L669 0.208536872674773 Q624 -A672 0.184860858770424 S627 -R674 0.167374255783226 S622 -S671 0.126726435109003 S627 -Q675 0.120303712882541 P623 -A628 0.0992771275870536 T625 -R674 0.0904089076321319 P623 -A670 0.0861337997419493 S622 -A672 0.0679867973646253 V626 -Q675 0.0629167221609415 Q624 -L669 0.0612186484476069 T625 -A672 0.034415343523706 S627 -A672 0.0251516485372836 V626 -R674 0.00161311195760394 V626 -G673 -0.0097290837655315 T625 -D668 -0.0166122967309299 T625 -A670 -0.0238006896595291 Q624 -Q675 -0.0317409829888908 Q624 -G673 -0.0529576717007501 P623 -G673 -0.0763178368263793 Q624 -A670 -0.0777102585600931 T625 -S671 -0.0885627259281856 S622 -R674 -0.100251489923026 S627 -D668 -0.105667064350728 L669 -R674 -0.121579981415043 P623 -L669 -0.126097100789504 S622 -G673 -0.140411295890519 T625 -Q675 -0.147247386421729 Q624 -S671 -0.18694587368183 P623 -S671 -0.240540969058859 S627 -G673 -0.264552248029533 A628 -A672 -0.322421281440757 T625 -G673 -0.339539408717778 S627 -A670 -0.423260350547125 S627 -S671 -0.444358040676178 A628 -D668 -0.495975238805209 S622 -Q675 -0.573177240394092 P623 -Q675 -0.845139842646198 Q624 -R674 -1.01921342508402