[Fri Aug 26 17:43:17 2016] >Input file: TMA0A0H3L7S6M1D.pdb >TM segments: 86-98_ 300-317 MAIDEN score = 0.0306 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A301 -S306 0.405504276918385 D96 -D302 0.250985011817021 G311 -G316 0.249252423507573 P300 -Q307 0.22201119876584 Q87 -G311 0.161040122679747 I312 -T317 0.14285646601521 G86 -G311 0.137299186900894 T98 -T303 0.127970524611099 G86 -G316 0.103351137775253 G86 -A315 0.101481751157769 S308 -A313 0.10042961598727 M94 -P300 0.0948740776781059 G86 -I312 0.0945302291076224 R93 -T98 0.0921523816414717 T98 -D302 0.0847173803343093 A301 -S308 0.0813939155353465 G86 -A313 0.0786831968310029 G86 -G314 0.0715675608773573 Q87 -G316 0.0699516905203996 G97 -A301 0.0657772971193964 D302 -S308 0.0520875127643267 G304 -E309 0.0332787490691944 M92 -T98 0.030754602177937 F89 -M94 0.0175279341889434 E309 -G314 0.0147203718141402 G311 -T317 0.00597010868470815 Q307 -I312 0.00104711185715178 F88 -T317 -0.012445711432675 Q87 -T317 -0.0185110123907553 T303 -S308 -0.0195565757730787 T303 -E309 -0.0262135703960711 T98 -S306 -0.0276797601891481 D96 -P300 -0.0306482060419189 D302 -Q307 -0.0379162322419098 I95 -P300 -0.0394490255874071 S306 -G311 -0.0425780818041117 G86 -S310 -0.0465085169382967 A301 -Q307 -0.0691868224991516 Q87 -I312 -0.0796960968649785 S310 -A315 -0.0804529009370611 D96 -A301 -0.0847336787144559 Q87 -A313 -0.0875873307695474 T98 -P300 -0.0922499844235861 I95 -A301 -0.111418345685379 V90 -I95 -0.118057937131594 G97 -P300 -0.153477835681514 G86 -T317 -0.160066862401253 T98 -A301 -0.160838777790927 M92 -G97 -0.221680909238839 E91 -D96 -0.234037281916447 P300 -S306 -0.337452297063631 P300 -L305 -0.568177245850026