[Fri Aug 26 17:48:44 2016] >Input file: TMA0A0H3L987S1D.pdb >TM segments: A628-633_A639-662_A665-699 MAIDEN score = -6.8548 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I667A-I674A 1.08639294264574 V669A-I674A 0.936393698835193 V642A-K649A 0.69423655314955 L677A-L682A 0.676457410399175 Q672A-L677A 0.60635874108662 R658A-L682A 0.606340706891004 L656A-I667A 0.596026048004276 T654A-H660A 0.595855937767745 L655A-H660A 0.553476729484875 R658A-I667A 0.535172424139116 R658A-I674A 0.53088727152969 L655A-V662A 0.499142373135407 L656A-I674A 0.478015367430175 I674A-L682A 0.462463237076863 R675A-L682A 0.401500192568108 R658A-A679A 0.397511219341816 R658A-Y683A 0.38469370901623 A657A-L682A 0.357809162837221 S650A-H660A 0.347025880614876 R658A-D673A 0.346151296042524 G643A-K649A 0.344548509124415 V662A-D673A 0.326162081318987 D628A-V662A 0.315711071870429 H660A-G665A 0.303877514629598 L633A-T639A 0.302919013500572 K649A-Q691A 0.301546751238095 A666A-I674A 0.299210301814896 G671A-L677A 0.2845050796199 S650A-A657A 0.28448885979858 G670A-S676A 0.28321589564822 L656A-G687A 0.282051352059523 L656A-R668A 0.280302214340765 G646A-L652A 0.275933519454805 G665A-D673A 0.272731228286093 L655A-G665A 0.259326704689823 G670A-L682A 0.255715986498102 Q672A-E681A 0.25243179277335 E681A-V686A 0.249592363877986 D628A-D661A 0.248564678872716 D673A-D680A 0.248131155987196 P644A-S650A 0.245036664139606 T654A-T684A 0.240573689705826 T651A-L690A 0.227901295940715 L641A-T651A 0.224379815722862 S676A-L682A 0.22178076529462 A678A-R685A 0.218563497043334 R658A-D680A 0.218074248477246 L656A-D661A 0.215435065898722 A657A-I674A 0.210762561465007 L633A-V669A 0.210440070174718 A657A-A678A 0.210388639535273 G643A-S650A 0.209710199960086 R658A-A666A 0.208806182234032 L641A-S650A 0.207638391288649 D628A-A666A 0.202180608277521 D673A-A678A 0.20201176080373 V662A-R668A 0.200007912049501 R658A-V669A 0.191390163704938 V669A-L682A 0.190897215206404 S630A-K649A 0.187475924332656 S676A-Y683A 0.180844179610453 H660A-I674A 0.180498229346603 D673A-R685A 0.179144995738089 A653A-I667A 0.178206311381564 D628A-K649A 0.177940109914921 T651A-I667A 0.175780492612575 T639A-T654A 0.17346650229563 H660A-F688A 0.171271455104584 V669A-L677A 0.167002693221797 H660A-Y683A 0.163507380851856 P644A-K649A 0.162150337666074 A693A-G698A 0.161636831452177 L633A-G671A 0.161125477408557 A678A-V686A 0.158558222627625 A657A-R668A 0.150327098783777 A666A-D673A 0.150006832065273 T654A-L690A 0.149157329253363 A653A-I674A 0.148070792397225 R658A-Q672A 0.143259776975259 V669A-A678A 0.142358272734477 A653A-G687A 0.133798902712067 S630A-V662A 0.133531614610013 A657A-D673A 0.133192948581693 A653A-A666A 0.132129375008929 A653A-D661A 0.127944655909037 D661A-A679A 0.126520052938958 L631A-K649A 0.125327635064871 V662A-I667A 0.123178332851854 V629A-S647A 0.122965749190136 S645A-Q691A 0.122779197294659 S630A-R668A 0.122119021052919 F688A-Q694A 0.12192821657537 G643A-T651A 0.121346169287667 Y683A-L690A 0.120986205024688 L655A-L677A 0.120573072709006 V629A-V642A 0.119492906508554 L656A-L690A 0.118495162185578 R658A-T684A 0.117303492727982 G670A-R675A 0.11631698508614 R658A-G687A 0.115448083197093 G646A-A653A 0.115138014647744 D661A-S676A 0.114548478169409 L655A-L682A 0.113239565396432 S630A-L652A 0.113195375033636 A640A-L656A 0.11241405792459 A653A-G665A 0.111515602707026 A640A-S645A 0.110625874919281 L652A-I674A 0.108691096581053 S630A-A653A 0.108478849677182 L633A-L652A 0.107899945241703 L656A-V662A 0.107500688512918 S650A-A693A 0.107184397799715 G687A-A693A 0.106529999632507 L677A-T684A 0.106081238150333 T639A-G687A 0.105915128564249 G648A-V662A 0.105565341428375 L633A-A657A 0.104761061386499 T639A-V686A 0.104434124408495 G665A-I674A 0.104094555211821 T654A-G665A 0.10235965329059 T654A-A679A 0.102124253063123 L655A-D673A 0.102089830114694 T639A-A653A 0.10199810054023 G670A-V686A 0.100462211236787 T632A-G671A 0.0997928742475326 G648A-H660A 0.0997222816291226 T632A-G670A 0.0988343833872667 S630A-A640A 0.0976914222529752 L690A-L695A 0.0972327539622631 R658A-G665A 0.0954178499018918 L655A-L690A 0.0944019823050422 L655A-A678A 0.0938078262904751 L633A-L655A 0.093614788977197 Q672A-R685A 0.0935495759739857 G670A-L677A 0.0919075964503424 T651A-F688A 0.0916122211742004 F659A-Q691A 0.091110014968466 T639A-V669A 0.0908531544792335 A640A-S650A 0.0907180768528253 L633A-A653A 0.090614846444065 V629A-L656A 0.0903181867012393 A640A-G648A 0.0901366918920532 E681A-G687A 0.0896580918045515 A657A-S676A 0.0890250210198786 L633A-Q672A 0.0885502262576274 L631A-L655A 0.0878847736686785 T654A-G687A 0.0873537555407636 L641A-F688A 0.0869817032090445 A666A-L682A 0.0863934962707917 S647A-T654A 0.0860054021409753 S630A-T639A 0.085660390167525 T639A-S650A 0.0854567858019071 A657A-V662A 0.0852020805248657 A666A-S676A 0.0850005305246562 G643A-L652A 0.0848456603785355 S645A-T651A 0.084368100543041 D661A-I674A 0.0834658565051756 H660A-I667A 0.0827388974403955 L631A-A666A 0.0820790900666344 L656A-A679A 0.0807051837516033 T632A-A653A 0.0802801108660702 L656A-S676A 0.080060513976945 S647A-A653A 0.0790853864976535 G670A-R685A 0.0756144856826548 R658A-S676A 0.0749321050999206 A653A-V662A 0.0743928750740315 L656A-V689A 0.0740206532094593 S630A-G648A 0.07345651281438 S650A-R658A 0.0724403117587986 G665A-S676A 0.0710935008960383 R675A-R685A 0.0691831018540192 I667A-R675A 0.0691672676714563 L652A-V662A 0.0686761394820206 R675A-D680A 0.067580961666768 A666A-L677A 0.0669262671506985 A640A-L690A 0.0665614058706279 G670A-A678A 0.0662581032734448 Q694A-T699A 0.0659910579057073 T632A-A640A 0.0642088004306522 A640A-A653A 0.0630839322833445 S645A-S650A 0.0621484260323262 L656A-G670A 0.0616656595581784 T639A-F688A 0.0599439613245423 L655A-Y683A 0.0587871675311256 L631A-G665A 0.058166981626878 A657A-A666A 0.0548060675079227 D673A-A679A 0.052853685186955 D628A-S647A 0.0517748891342475 T654A-I674A 0.0488546670975829 V629A-L641A 0.0486211798567098 H660A-A678A 0.0486014465739038 L655A-D661A 0.0484894354860392 A653A-R668A 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