[Fri Aug 26 18:07:53 2016] >Input file: TMA0A0H3LG76M1D.pdb >TM segments: 133-142_ 145-154 MAIDEN score = -1.7422 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V135 -A153 0.395607307735268 E134 -Q150 0.32779643773936 V135 -V151 0.275236027589483 A136 -G152 0.264252863108899 G142 -D147 0.217436400104545 V137 -G152 0.216009432590302 V135 -D148 0.164437230996807 D133 -A153 0.133420662770198 V137 -L145 0.118382022740822 S139 -L145 0.115809450153193 G142 -V151 0.114197702841258 A136 -L141 0.11136717108438 S138 -V151 0.110187004381663 A136 -G142 0.100877385694982 A136 -L149 0.0773336045474906 V135 -L141 0.0742133525356126 S138 -L145 0.0632093958858078 A136 -L145 0.0600347228445572 A136 -Q150 0.057648930348067 E134 -G152 0.0564720103032701 V137 -R154 0.0544734719668258 S139 -G146 0.037178908907106 S138 -Q150 0.0348184065361885 S138 -L149 0.0321930402137942 V135 -D147 0.0301338770222932 V137 -D148 0.0293251292104948 T140 -L145 0.0253069334794622 E134 -R154 0.0252311791023963 L141 -V151 0.0242267810699222 S138 -G152 0.0233858420212116 S138 -A153 0.0160762938045673 E134 -V151 0.0151793658739132 S139 -D147 0.0148704553744187 S138 -D147 0.00988304494294487 A136 -G146 0.00395543174062052 D133 -Q150 0.00326854191040971 G146 -V151 -0.00225173053914141 L141 -D148 -0.00409999554904195 V135 -G146 -0.00638834549424772 V137 -Q150 -0.00712133477942078 E134 -L149 -0.0114957640991982 V137 -G146 -0.0242388335652843 L141 -D147 -0.0251247788003857 D133 -R154 -0.0275285083834429 T140 -V151 -0.027603088980888 V135 -G142 -0.0280316892925043 L141 -G146 -0.032609217654245 S138 -G146 -0.0334122285903076 L141 -G152 -0.0347688024654468 S138 -R154 -0.0449505827828368 S139 -V151 -0.0464820713160821 L145 -Q150 -0.0653785426698077 L141 -Q150 -0.0657180462748421 T140 -L149 -0.0663866177809354 S139 -L149 -0.0687888662501628 T140 -D147 -0.0696949300493843 L141 -A153 -0.0708007853921204 D133 -G152 -0.0779502191220538 E134 -G146 -0.0782500153835498 G142 -D148 -0.0825741118820424 V137 -G142 -0.0920463794775923 G142 -Q150 -0.103264418336868 V135 -L145 -0.111088837308407 V137 -D147 -0.116433016335436 V135 -T140 -0.119205553617324 A136 -V151 -0.123667999905085 V135 -R154 -0.127877227601121 V135 -G152 -0.130903220160124 A136 -D148 -0.150247873138877 E134 -D148 -0.157649148104193 V135 -L149 -0.163161274849245 G142 -L149 -0.167228881366584 A136 -D147 -0.167363437592796 E134 -A153 -0.169855431991883 A136 -A153 -0.171249696548047 L141 -L149 -0.18792216214916 A136 -R154 -0.189643533564098 D133 -V151 -0.278382623192398 V137 -V151 -0.297757396617731 V137 -A153 -0.330386506029758 V137 -L149 -0.393140217778301 V135 -Q150 -0.425520188115049