[Fri Aug 26 18:08:03 2016] >Input file: TMA0A0H3LGH0M1D.pdb >TM segments: 22-48 MAIDEN score = -5.7322 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- G34 -V39 0.638218356916273 L28 -P33 0.570839402326183 E26 -P31 0.492504041500729 I36 -A41 0.386313877584895 A42 -H47 0.336161597883026 A42 -P48 0.32745719132583 L38 -V43 0.285620522693828 E35 -H47 0.273496598632958 P31 -S40 0.268256973825049 L38 -H47 0.253545777815656 V43 -P48 0.212868018782684 L38 -P48 0.192312123357134 V37 -S46 0.166815423902205 V37 -H47 0.161148234456307 L28 -G34 0.147619059909656 G29 -L38 0.144546884550784 E26 -E35 0.14438309615541 S27 -L38 0.1375172095532 S27 -V37 0.122299020845389 V37 -A42 0.116082031802035 P33 -A42 0.1088937207014 S27 -L32 0.103331678256479 P31 -A42 0.103200399559765 G24 -G29 0.0827582365092565 L28 -V37 0.0808916686209527 L28 -E35 0.0756777380121896 G24 -G34 0.0754029761331156 V22 -L28 0.0750563153318065 I25 -A42 0.0735055856515475 E35 -A41 0.0715019892504847 E26 -L32 0.0709217158480977 V22 -S27 0.0657406927614321 E35 -L44 0.0632733596093957 E26 -I36 0.0573664376910843 L28 -V39 0.0458858025535358 G34 -V43 0.0450635008980189 I25 -V37 0.0391244016493175 S27 -I36 0.0372794580038023 E35 -S45 0.0364204605146154 S27 -P33 0.0252336053431055 E35 -A42 0.0240409403850128 G34 -L44 0.0193397660713372 V23 -L38 0.0156723201843638 V37 -P48 0.0135143460472884 A41 -P48 0.0127789148206761 I36 -H47 0.0111946175695632 G29 -I36 0.00919340346529607 P31 -I36 0.00253043047997714 G29 -V37 0.00241844293238991 I30 -V39 6.20634056236469e-06 P33 -V39 -0.00180149780994032 P31 -A41 -0.0025781175283508 E26 -L38 -0.0118461338344598 I25 -P33 -0.0119512466294961 V23 -G29 -0.0166330927948311 E35 -S46 -0.0205221587399458 I36 -S45 -0.0214908702442798 I30 -I36 -0.0267686058861552 V23 -G34 -0.0402605465790229 V39 -L44 -0.041389254069319 L28 -L38 -0.0418676719211453 S27 -E35 -0.0495916128873576 I30 -S40 -0.0513286563145439 G29 -V39 -0.0603351888545172 E26 -A42 -0.062834068000905 P33 -V43 -0.0716205830930513 L32 -A42 -0.0763427444137221 E26 -A41 -0.0772053904202803 E26 -V39 -0.0775732140257737 E35 -S40 -0.0847356358838702 L28 -I36 -0.0854168315232113 I36 -S46 -0.0869197287065633 G34 -A42 -0.0869328855530433 I25 -L38 -0.0929117712368494 S40 -S46 -0.0967532588129707 L32 -A41 -0.106706270310617 I25 -P31 -0.113066517437717 I30 -L38 -0.118395566957751 G34 -S40 -0.124440716177 I36 -L44 -0.131443348930991 E26 -P33 -0.134351351194522 A41 -H47 -0.13439493019786 I25 -I36 -0.143883983851297 I25 -I30 -0.145724121064754 I36 -A42 -0.146863289163393 L32 -V37 -0.147753288405918 P33 -A41 -0.159548903591078 I25 -E35 -0.160133035695128 S40 -H47 -0.169888346795075 G29 -E35 -0.171759983803005 I30 -V37 -0.1723860563835 E35 -V43 -0.172907399066481 P31 -V37 -0.174296981476946 I36 -V43 -0.183866787584041 L32 -S40 -0.18513313753979 L38 -S46 -0.190294307593218 P31 -V39 -0.195494050979669 I30 -E35 -0.196304887552289 P33 -L38 -0.198972855279877 V37 -L44 -0.199944391423337 V39 -P48 -0.206138916022351 L32 -V39 -0.233843717453812 G29 -G34 -0.239202144470754 V37 -V43 -0.244967999240814 V23 -L28 -0.246639938381668 S27 -G34 -0.247122452906847 V39 -S45 -0.252148282351053 G34 -A41 -0.254621782882041 E35 -P48 -0.264228122080361 S40 -P48 -0.268536013200636 E26 -G34 -0.275999726565511 V39 -S46 -0.287436515379255 I25 -G34 -0.29744798613438 E26 -V37 -0.325372136627723 L38 -S45 -0.327194355752563 V39 -H47 -0.336259817310096 P33 -S40 -0.336613563602231 V37 -S45 -0.361470048755324 A41 -S46 -0.426904959972566 L32 -L38 -0.429052631253097 L38 -L44 -0.456357790231604 S40 -S45 -0.462103245370141 P31 -L38 -0.50219694535378