[Mon Aug 29 17:58:48 2016] >Input file: TMA0A0H3M2D4M1G.pdb >TM segments: 30-41 MAIDEN score = -0.1264 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A33 -A39 0.212287046939476 A30 -F36 0.199627716316884 A33 -A38 0.185342940166658 S31 -A39 0.163802881820668 E34 -A39 0.0992264540616974 S31 -A38 0.094663930688343 E34 -D40 0.0678234513032066 A30 -A37 0.0639507182214216 S31 -A37 0.0107179657758687 F32 -A39 -0.0485933398061293 F32 -A38 -0.0554858342959061 A30 -S35 -0.0579861491999285 F32 -A37 -0.0668646129206198 F36 -P41 -0.0977281116499644 S35 -D40 -0.108347501116536 S35 -P41 -0.192540045142987 S31 -F36 -0.288710944381029 E34 -P41 -0.30760421822993